View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-5-90 (Length: 656)
Name: J5-5-90
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-5-90 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 235 - 445
Target Start/End: Original strand, 45306256 - 45306466
Alignment:
| Q |
235 |
ttttgtgactgctcaaatgatatatgtttaaatggttgtaatcatacaagtatatatgttcttgtcacttgagttttagtatgaaatttcataatcgata |
334 |
Q |
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| T |
45306256 |
ttttgtgactgctcaaatgatatatgtttaaatggttgtaatcatacaagtatatatgttcttgtcacttgagttttagtatgaaatttcataatcgata |
45306355 |
T |
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| Q |
335 |
tttacacataaattcaatcataaattctcaatacggttgatagttttttcataagaaaaaattgattgtgttacatttaaatgataaatttctagtgaac |
434 |
Q |
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| T |
45306356 |
tttacacataaattcaatcataaattctcaatacggttgatagttttttcataagaaaaaattgattgtgttacatttaaatgataaatttctagtgaac |
45306455 |
T |
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| Q |
435 |
ataactcaatt |
445 |
Q |
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| T |
45306456 |
ataactcaatt |
45306466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 45306022 - 45306205
Alignment:
| Q |
1 |
aactgctccctctttcacccttttctttgtctattttgctgtccaatctccttgcatgtacggttcaagtcgaatacttcttcttttttcacctctacga |
100 |
Q |
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| T |
45306022 |
aactgctccctctttcacccttttctttgtctattttgctgtccaatctccttgcatgtacggttcaagtcgaatacttcttcttttttcacctctacga |
45306121 |
T |
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| Q |
101 |
tctgataataccatataatgtatcttctttctcaataaaatacatacatacagtattatattaccaattctgcaactagcatgg |
184 |
Q |
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| T |
45306122 |
tctgataataccatataatgtatcttctttctcaataaaatacatacatacagtattatattaccaattctgcaactagcatgg |
45306205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 442 - 548
Target Start/End: Original strand, 45305886 - 45305992
Alignment:
| Q |
442 |
aattctgggagattgatttgttattgggagtagagaatgaaaa-cgacgtgacgatgatgagggttatcatgagcctcatcactcattttatggntctct |
540 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |
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| T |
45305886 |
aattctgggagattgatttgttattgggagtagagaatgaaaaacgacgtgacgatgatgagggttatcatgagcctcatcactca-tttattgttctct |
45305984 |
T |
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| Q |
541 |
tttacgtc |
548 |
Q |
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|||||||| |
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|
| T |
45305985 |
tttacgtc |
45305992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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