View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-5-93 (Length: 723)
Name: J5-5-93
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-5-93 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 47984558 - 47984905
Alignment:
| Q |
1 |
ctagtctacatctattgtgacaaaggcttggtttgaggttaagttaatgggaatgaagaaagttcttttcttaagacttggatactcaaccgtagcatct |
100 |
Q |
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| T |
47984558 |
ctagtctacatctattgtgacaaaggcttggtttgaggttaagttaatgggaatgaagaaagttcttttcttaagacttggatactcaaccgtagcatct |
47984657 |
T |
|
| Q |
101 |
gcgaaaattcgcagatcagaatgggatggaccttcaacctcatctagaaaataaggatttttcagcattgatgagtgcaaagcttagccaagaattgcat |
200 |
Q |
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| T |
47984658 |
gcgaaaattcgcagatcagaatgggatggaccttcaacctcatctagaaaataaggatttttcagcattgatgagtgcaaagcttagccaagaattgcat |
47984757 |
T |
|
| Q |
201 |
tcacctgaaaaacaatataaagttgacataaactcggcaatttatcatggtggtccacctgtgccaacaagggctcccaaaatgcttaactttgtggaca |
300 |
Q |
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| T |
47984758 |
tcacctgaaaaacaatataaagttgacataaactcggcaatttatcatggtggtccacctgtgccaacaagggctcccaaaatgcttaactttgtggaca |
47984857 |
T |
|
| Q |
301 |
cagaggaaatggtaaggggtccagaggcagggccgtccctaagaattc |
348 |
Q |
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| T |
47984858 |
cagaggaaatggtaaggggtccagaggcagggccgtccctaagaattc |
47984905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 343 - 638
Target Start/End: Original strand, 47983764 - 47984051
Alignment:
| Q |
343 |
gaattctgtcccaggaaatggatttgtaagtcatttggtgaatttgtatcttagatgtgagtagtagacacctgcgactttggttttcctctgcccaata |
442 |
Q |
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| T |
47983764 |
gaattctgtcccaggaaatggatttgtaagtcatttggtgaatttgtatcttagatgtgagtagtagacacctgcgactttggttttcctctgcccaata |
47983863 |
T |
|
| Q |
443 |
ctttttcttcttctggatttttattctctgttggaatatatggttggtacatctgttttaaaaattctggtttcaaacagataaancctgcaatagagga |
542 |
Q |
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| T |
47983864 |
ctttttcttcttctggatttttattctctgttggaatatat-gttggtacatctg-tttaaaaattct-gtttcaaacagataaa-cctgcaatagagga |
47983959 |
T |
|
| Q |
543 |
acttccatcaatttcctagagtttccngttgccncgacaatgcgcacngatgtatgggggatctgccccctgncttttgaccntaagtatnaaagg |
638 |
Q |
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| T |
47983960 |
actt-catcaattt-ctagagttt-cagttgccacgacaatgcgcaacgatgtat-ggtgatctgcctcttgtcttttgaccataagtataaaagg |
47984051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 272; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 3 - 327
Target Start/End: Complemental strand, 35115573 - 35115247
Alignment:
| Q |
3 |
agtctacatctattgtgacaaaggcttggtttgaggttaagttaatgggaatgaagaaagttcttttcttaagacttggatactcaaccgtagcatctgc |
102 |
Q |
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| T |
35115573 |
agtctacgtctattgtgacaaaggcttggtttgaggttaagctaatgggaatgaagaaagttcttttcttaagacttggatactcaaccgtagcatctgc |
35115474 |
T |
|
| Q |
103 |
gaaaattcgcagatcagaatgggatggaccttcaacctcatctagaaaataaggat--ttttcagcattgatgagtgcaaagcttagccaagaattgcat |
200 |
Q |
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| T |
35115473 |
gaaaattcgcagatcagaatgggatggaccttcaacctcatctagaaaatcaggattcttttcagcattgatgagtgcaaagcttagccaaggattgcat |
35115374 |
T |
|
| Q |
201 |
tcacctgaaaaacaatataaagttgacataaactcggcaatttatcatggtggtccacctgtgccaacaagggctcccaaaatgcttaactttgtggaca |
300 |
Q |
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| T |
35115373 |
tcacctgagaaacaatctaaagttgacataaactcggcaatttatcatggtggtccgcctgtgccaacaagggctcccaaaatgcttaattttgtcgaca |
35115274 |
T |
|
| Q |
301 |
cagaggaaatggtaaggggtccagagg |
327 |
Q |
| |
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|| |||||||||| ||||||||||||| |
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| T |
35115273 |
caaaggaaatggttaggggtccagagg |
35115247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 343 - 599
Target Start/End: Complemental strand, 35116373 - 35116126
Alignment:
| Q |
343 |
gaattctgtcccaggaaatggatttgtaagtcatttggtgaatttgtatcttagatgtgagtagtagacacctgcgactttggttttcctctgcccaata |
442 |
Q |
| |
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| T |
35116373 |
gaattctgtcccaggaaatggatttttaagtcatgcggtgaatttgtatcttagatgtg---agtaaacacctgcgactttggttttcctctgcccaata |
35116277 |
T |
|
| Q |
443 |
ctttttct-tcttctggatttttattctctgttggaatatatggttggtacatctgttttaaaaattctggtttcaaacagataaancctgcaatagagg |
541 |
Q |
| |
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|||||| | |||| ||||||| |||||| ||||||||||||| ||||||||||||| ||||| |||||| |||||||||||||||| ||||||||||| | |
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| T |
35116276 |
ctttttttctcttatggatttctattctttgttggaatatat-gttggtacatctg-tttaataattct-gtttcaaacagataaa-cctgcaatagaag |
35116181 |
T |
|
| Q |
542 |
aacttccatcaatttcctagagtttccngttgccncgacaatgcgcacngatgtatgg |
599 |
Q |
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||||| ||||||||| ||||||||| | |||||| |||||||| |||| ||||||||| |
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| T |
35116180 |
aactt-catcaattt-ctagagttt-cagttgccacgacaatgggcaccgatgtatgg |
35116126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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