View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-5-95 (Length: 490)
Name: J5-5-95
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-5-95 |
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Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 8504930 - 8504528
Alignment:
| Q |
1 |
aattcaataaagtatagtataatgcaagttgattcataggtaaatattgagaaagaaaatacaaatacacgattagagagtgccagttgattgtggccat |
100 |
Q |
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| T |
8504930 |
aattcaataaagtatagtataatgcaagttgattcataggtaaatattgagaaagaaaatacaaatacacgattagagagtgccagttgattgtggccat |
8504831 |
T |
|
| Q |
101 |
aataaaaataccaaattatgatattccattggatttaatatggtttgttttttcttgaattttgacaaggaacttttcccctcttattattcagtcgtca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8504830 |
aataaaaataccaaattatgatattccattggatttaatatggtttgttttttcttgaattttgacaaggaacttttcccctcttattattcagtcgtca |
8504731 |
T |
|
| Q |
201 |
aagcatacatacacaaaatgtcaatgattattcatgtgagtagttgacggatatgaatcccactaatttttctcattagatccatagaaagacagctagc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8504730 |
aagcatacatacacaaaatgtcaatgattattcatgtgagtagttgacggatatgaatcccactaatttttctcattagatccatagaaagacagctagc |
8504631 |
T |
|
| Q |
301 |
tagcgacttcttgtccaatctaattaaatatctccaatataggaagtcatttgcacgagttattttttgtctcatattcaaaataactatgaattttggt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8504630 |
tagcgacttcttgtccaatctaattaaatatctccaatataggaagtcatttgcacgagttattttttgtctcatattcaaaataactatgaattttggt |
8504531 |
T |
|
| Q |
401 |
ctc |
403 |
Q |
| |
|
||| |
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|
| T |
8504530 |
ctc |
8504528 |
T |
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