View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-50 (Length: 429)
Name: J5-50
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-50 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 202 - 429
Target Start/End: Original strand, 47421646 - 47421873
Alignment:
| Q |
202 |
gttgcaaacatcaacaacaccttccaccacatacccttaattccttctacttctacttccaattctcatgatcaatttccacttcaaactcaaataaacc |
301 |
Q |
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| T |
47421646 |
gttgcaaacatcaacaacaccttccaccacatacccttaattccttctacttctacttccaattctcatgatcaatttccacttcaaactcaaataaacc |
47421745 |
T |
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| Q |
302 |
tcttccacccatcaatattatcattgccccaccactcccctaacaccactacctttaattctaattctaattcaatcaacttccagatccaaattccacc |
401 |
Q |
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| T |
47421746 |
tcttccacccatcaatattatcattgccccaccactcccctaacaccactacctttaattctaattctaattcaatcaacttccagatccaaattccacc |
47421845 |
T |
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| Q |
402 |
accgttgatcatcgattctagctggacc |
429 |
Q |
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| T |
47421846 |
accgttgatcatcgattctagctggacc |
47421873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 47421869 - 47422018
Alignment:
| Q |
1 |
ggaccaaccacgaacttcttgtactcttcaagatcacatctaccatccacaatttcttcccagatcaactcatcacatgggatcatgtctcaaggtaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47421869 |
ggaccaaccacgaacttcttgtactcttcaagatcacatctaccatccacaatttcttcccagatcaactcatcacatgggatcatgtctcaaggtaatt |
47421968 |
T |
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| Q |
101 |
acaattattatataaatgtttcattgatatttggttaattatgtcaattg |
150 |
Q |
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| T |
47421969 |
acaattattatataaatgtttcattgatatttggttaattatgtcaattg |
47422018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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