View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-51 (Length: 223)
Name: J5-51
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-51 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1435998 - 1436220
Alignment:
| Q |
1 |
attgttggagattttggttatgcaatgcttatggattacaaagatacccatgatactactgctgtctttggtacgattgggcatatagcacctgaatatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1435998 |
attgttggagattttggttatgcaatgcttatggattacaaagatacccatgatactactgctgtctttggtacgattgggcatatagcacctgaatatc |
1436097 |
T |
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| Q |
101 |
tcttaactggaaggtcttcagaaaagaccgatgtttttgcatatggtgtgatgcttcttgaactaataactggaccgagggcttctgatctagcacgtct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1436098 |
tcttaactggaaggtcttcagaaaagaccgatgtttttgcatatggtgtgatgcttcttgaactaataactggaccgagggcttctgatctagcacgtct |
1436197 |
T |
|
| Q |
201 |
tgctgatgatgatgtgatattgc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
1436198 |
tgctgatgatgatgtgatattgc |
1436220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 2 - 214
Target Start/End: Original strand, 1429389 - 1429601
Alignment:
| Q |
2 |
ttgttggagattttggttatgcaatgcttatggattacaaagatacccatgatactactgctgtctttggtacgattgggcatatagcacctgaatatct |
101 |
Q |
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|||| |||||||| |||| |||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||| || || |
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| T |
1429389 |
ttgtgggagatttcggtttagcaaagcttatggattacaaagatacccatgttactactgctgtccgtggtacgattggacatatagcacctgagtacct |
1429488 |
T |
|
| Q |
102 |
cttaactggaaggtcttcagaaaagaccgatgtttttgcatatggtgtgatgcttcttgaactaataactggaccgagggcttctgatctagcacgtctt |
201 |
Q |
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| T |
1429489 |
gtcaactggaaagtcttcagaaaagactgatgtttttggatatggtgtgatgcttcttgaactaataactggacaaagggcttttgatctagcacgtctt |
1429588 |
T |
|
| Q |
202 |
gctgatgatgatg |
214 |
Q |
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|| ||||||||| |
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| T |
1429589 |
gccaatgatgatg |
1429601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 81 - 214
Target Start/End: Complemental strand, 21018224 - 21018091
Alignment:
| Q |
81 |
gcatatagcacctgaatatctcttaactggaaggtcttcagaaaagaccgatgtttttgcatatggtgtgatgcttcttgaactaataactggaccgagg |
180 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21018224 |
gcatatagcacctgagtatctcttaactagaaggtcttcagaaaagatcgatgtttttgcatatggtgtgatgcttcttgaactaataactggaccgagg |
21018125 |
T |
|
| Q |
181 |
gcttctgatctagcacgtcttgctgatgatgatg |
214 |
Q |
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|||||||| |||||||||||||| ||||||||| |
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| T |
21018124 |
gcttctgacctagcacgtcttgccaatgatgatg |
21018091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 1448822 - 1449046
Alignment:
| Q |
2 |
ttgttggagattttggttatgcaatgcttatggattacaaagatacccatgatactactgctgtctttggtacgattgggcatatagcacctgaatatct |
101 |
Q |
| |
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||||||||||||| |||| |||| |||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||| || || |
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| T |
1448822 |
ttgttggagatttcggtttagcaaggcttatggcttacaaagatacccatgtcactactgctgttcaaggtacacttgggcatataccacctgagtacct |
1448921 |
T |
|
| Q |
102 |
cttaactggaaggtcttcagaaaagaccgatgtttttgcatatggtgtgatgcttcttgaactaataactggaccgagggcttctgatctagcacgtctt |
201 |
Q |
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| ||| |||| ||||||||||||||| |||||||||| ||||||| ||||||||||||||| | |||||||| |||||||| ||| |||||||||||| |
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| T |
1448922 |
gtcaaccggaaagtcttcagaaaagactgatgtttttggatatggtacgatgcttcttgaactgacaactggacagagggcttttgacctagcacgtctt |
1449021 |
T |
|
| Q |
202 |
gc---tgatgatgatgtgatattgc |
223 |
Q |
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|| ||||||||||||||| |||| |
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| T |
1449022 |
gccggtgatgatgatgtgatgttgc |
1449046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 1441418 - 1441642
Alignment:
| Q |
2 |
ttgttggagattttggttatgcaatgcttatggattacaaagatacccatgatactactgctgtctttggtacgattgggcatatagcacctgaatatct |
101 |
Q |
| |
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||||||||||||| |||| |||| |||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||| | ||||| || || |
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| T |
1441418 |
ttgttggagatttcggtttagcaaagcttatggcttacaaagatacccatgtcactactgctgttcgaggtacacttgggcatataccccctgagtacct |
1441517 |
T |
|
| Q |
102 |
cttaactggaaggtcttcagaaaagaccgatgtttttgcatatggtgtgatgcttcttgaactaataactggaccgagggcttctgatctagcacgtctt |
201 |
Q |
| |
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| ||| |||| ||||||||||||||| |||||||||| |||||| ||||||||| ||||| | ||||||| |||||||| |||||||||||||||| |
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| T |
1441518 |
gtcaaccggaaagtcttcagaaaagactgatgtttttggatatggcacgatgcttctagaactgacaactggaaagagggcttttgatctagcacgtctt |
1441617 |
T |
|
| Q |
202 |
gc---tgatgatgatgtgatattgc |
223 |
Q |
| |
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|| ||||||||||||||| |||| |
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| T |
1441618 |
gccggtgatgatgatgtgatgttgc |
1441642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 184
Target Start/End: Original strand, 1455578 - 1455760
Alignment:
| Q |
2 |
ttgttggagattttggttatgcaatgcttatggattacaaagatacccatgatactactgctgtctttggtacgattgggcatatagcacctgaatatct |
101 |
Q |
| |
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||||||||||||| |||| |||| |||||||| ||||||||||||||||| ||||||||||| ||||| ||||| |||||||||| || || || |
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| T |
1455578 |
ttgttggagatttcggtttagcaaagcttatggcttacaaagatacccatgtcactactgctgttcaaggtacacttgggtatatagcacccgagtacct |
1455677 |
T |
|
| Q |
102 |
cttaactggaaggtcttcagaaaagaccgatgtttttgcatatggtgtgatgcttcttgaactaataactggaccgagggctt |
184 |
Q |
| |
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| ||| |||| ||||||||||||||| ||||||| || ||||||| |||||||| |||||||||||||||||| ||| |||| |
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| T |
1455678 |
gtcaacaggaaagtcttcagaaaagactgatgtttatggatatggtatgatgctttttgaactaataactggacagagtgctt |
1455760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 175
Target Start/End: Complemental strand, 43826538 - 43826391
Alignment:
| Q |
28 |
cttatggattacaaagatacccatgatactactgctgtctttggtacgattgggcatatagcacctgaatatctcttaactggaaggtcttcagaaaaga |
127 |
Q |
| |
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|||||||||||||| || ||||||| ||| |||||||| ||||| |||||||||||||| || || || || | ||||| | ||||||||| || | |
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| T |
43826538 |
cttatggattacaaggacacccatgttacaactgctgttcggggtacaattgggcatatagctcccgagtacctatctactggcaagtcttcagagaaaa |
43826439 |
T |
|
| Q |
128 |
ccgatgtttttgcatatggtgtgatgcttcttgaactaataactggac |
175 |
Q |
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| |||||||||| |||||| | ||||||||||| || |||||||||| |
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| T |
43826438 |
ctgatgtttttggttatggtatcatgcttcttgagcttataactggac |
43826391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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