View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-52 (Length: 541)
Name: J5-52
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-52 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 96 - 539
Target Start/End: Complemental strand, 14865031 - 14864588
Alignment:
| Q |
96 |
caattgtggtagcattcaatggatgacctgtaagaacttccttccctagtgccacgaccacgtcccctgcctcttcctctaaagcttcctcggccaccgc |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14865031 |
caattgtggtagcattcaatggatgacctgtaagaacttccttctctagtgccacgaccacgtcccctgcctcttcctctaaagcttcctcggccaccgc |
14864932 |
T |
|
| Q |
196 |
ttcttctagaaaaatttccagcatgagtcactttgagagcttactcttccttaacttgatttgacatgcgttgttcatgcactaatagtgaactttgtaa |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14864931 |
ttcttctagaaaaatttccagcatgagtcactttgagagcttactcttccttaacttgatttgacatgcgttgttcatgcactaatagtgaactttgtaa |
14864832 |
T |
|
| Q |
296 |
ttcatctactggcatggtgtcgatgtcatttgattcttctattgaacatacgacatagtcaaacttagttgtcatagagcgtaaaattttctctataatt |
395 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14864831 |
ttcatctactgacatggtgtcgatgtcatttgattcttctattgaacatacgacatagtcaaacttagttgtcatagagcgtaaaattttctctataatt |
14864732 |
T |
|
| Q |
396 |
gtcacatcttccatcttctcttcatgtatcctcattcggtttgcaatcgtcaacgtccttgcaaaatactcatcaacagattctccagccttcatgtgca |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14864731 |
gtcacatcttccatcttctcttcatgtatcctcattcggtttgcaatcgtcaacgtccttgcaaaatactcatcaacagattctccagccttcatgtgca |
14864632 |
T |
|
| Q |
496 |
gaatttcaaactctttacgaagagcttgtaattgagtgtgcttg |
539 |
Q |
| |
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| T |
14864631 |
gaatttcaaactctttacgaagagcttgtaattgagtgtgcttg |
14864588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 14864591 - 14864491
Alignment:
| Q |
1 |
cttgactctactattgccttgatacttcttctttaaggagtcccatatgcctttggaagtatccttcttgagaatggtttcgagaacaactcgatcaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14864591 |
cttgactctactattgccttgatacttcttctttaaggagtcccatatgcctttggaagtatccttcttgagaatggtttcgagaacaactcgatcaatt |
14864492 |
T |
|
| Q |
101 |
g |
101 |
Q |
| |
|
| |
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|
| T |
14864491 |
g |
14864491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 104 - 536
Target Start/End: Original strand, 9363940 - 9364372
Alignment:
| Q |
104 |
gtagcattcaatggatgacctgtaagaacttccttccctagtgccacgaccacgtcccctgcctcttcctctaaagcttcctcggccaccgcttcttcta |
203 |
Q |
| |
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||||||||||| ||||||| ||||| |||||||||| ||||||||||||||||||| ||| ||||||||||||||||||| ||| | ||| ||||||| | |
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| T |
9363940 |
gtagcattcaaaggatgacttgtaaaaacttccttctctagtgccacgaccacgtctcctacctcttcctctaaagcttcatcgacgaccacttcttcca |
9364039 |
T |
|
| Q |
204 |
gaaaaatttccagcatgagtcactttgagagcttactcttccttaacttgatttgacatgcgttgttcatgcactaatagtgaactttgtaattcatcta |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||| |||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
9364040 |
gaaaaatttccagcatgagtcactttgagagcttgctcttcctcaacatgatttgacatgtgttgttcatgcattaatagtgaacattgtaattcatcta |
9364139 |
T |
|
| Q |
304 |
ctggcatggtgtcgatgtcatttgattcttctattgaacatacgacatagtcaaacttagttgtcatagagcgtaaaattttctctataattgtcacatc |
403 |
Q |
| |
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||| ||| ||||| |||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||| || |||||||||||||||| ||||||| |
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| T |
9364140 |
ctgacatagtgtcaatgtcatttgattcttctattgaatatacgacataatcaaacttagatgtcatagagcatataattttctctataattctcacatc |
9364239 |
T |
|
| Q |
404 |
ttccatcttctcttcatgtatcctcattcggtttgcaatcgtcaacgtccttgcaaaatactcatcaacagattctccagccttcatgtgcagaatttca |
503 |
Q |
| |
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||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9364240 |
ttccatcttctctccatgtatcctcatccggtttgcaatcgtcaacgtccttgcaaaatactcatcaacagattctccagctttcatgtgcagaatttca |
9364339 |
T |
|
| Q |
504 |
aactctttacgaagagcttgtaattgagtgtgc |
536 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| |
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|
| T |
9364340 |
aactctttacaaagagcttgtaattgagcgtgc |
9364372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 6 - 102
Target Start/End: Original strand, 9364377 - 9364473
Alignment:
| Q |
6 |
ctctactattgccttgatacttcttctttaaggagtcccatatgcctttggaagtatccttcttgagaatggtttcgagaacaactcgatcaattgt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||| |||||||||| ||||||||||| |||||||| |
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| T |
9364377 |
ctctactattgccttgatacttcttctttaaggagtcccatatgtcgttggaagtatcgttcttaagaatggttttgagaacaactcattcaattgt |
9364473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 523
Target Start/End: Original strand, 17539708 - 17539796
Alignment:
| Q |
435 |
tttgcaatcgtcaacgtccttgcaaaatactcatcaacagattctccagccttcatgtgcagaatttcaaactctttacgaagagcttg |
523 |
Q |
| |
|
|||||||| | ||| || |||| |||||| |||| || |||||||| |||||||||| ||||||||||||||||| ||||||||||| |
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| T |
17539708 |
tttgcaattgacaatgttcttgaaaaataatcattgactgattctccttccttcatgtgaagaatttcaaactctttgcgaagagcttg |
17539796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 523
Target Start/End: Complemental strand, 17009224 - 17009154
Alignment:
| Q |
453 |
cttgcaaaatactcatcaacagattctccagccttcatgtgcagaatttcaaactctttacgaagagcttg |
523 |
Q |
| |
|
|||| |||||| |||| || |||||||| |||||||||| ||||||||||||||||| ||||||||||| |
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| T |
17009224 |
cttgaaaaataatcattgactgattctccttccttcatgtgaagaatttcaaactctttgcgaagagcttg |
17009154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 523
Target Start/End: Original strand, 45828642 - 45828730
Alignment:
| Q |
435 |
tttgcaatcgtcaacgtccttgcaaaatactcatcaacagattctccagccttcatgtgcagaatttcaaactctttacgaagagcttg |
523 |
Q |
| |
|
|||||||| | ||| || |||| |||||| |||| || |||||||| |||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
45828642 |
tttgcaattgacaatgttcttgaaaaataatcattgactgattctccttccttcatgtgaagaatttcaaactctttgcgaagagcttg |
45828730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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