View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-56 (Length: 637)
Name: J5-56
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-56 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 4343633 - 4343204
Alignment:
| Q |
1 |
cttaatattcgcagttgaagaaagctgattgagcctcaatcgtggtcgcagagacatcaaaaactttgatgtcgcaggcannnnnnnaaaaccttgtata |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4343633 |
cttaatattcgcagttgaagaaagctgattgagcctcaatcgtggtcgcagagacatcaaaaactttgatgtcgcaggcatttttttaaaaccttgtata |
4343534 |
T |
|
| Q |
101 |
aacccttaatcatttttagagtgaaggtcgcaatagaagttgagaaacatttacacatcatattagggttagaagaacttcaacctaataatggacacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4343533 |
aacccttaatcatttttagagtgaaggtcgcaatagaagttgagaaacatttacacatcatattagggttagaagaacttcaacctaataatggacacat |
4343434 |
T |
|
| Q |
201 |
taattcaaatgagaaagtagaaaatgtacagtgtttcaagctcagataaggactggattgctgaagagagctgaccctccaatttcaagctaggtagttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4343433 |
taattcaaatgagaaagtagaaaatgtacagtgtttcaagctcagataaggactggattgctgaagagagctgaccctccaatttcaagctaggtagttt |
4343334 |
T |
|
| Q |
301 |
cctgaaagnnnnnnnntagcattattttcagattcaatatgtaatccttggattggcgcaacaaacttgaatggaacaaagaaacaaagatctaacaatt |
400 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4343333 |
cctgaaagaaaaaaaatagcattattttcagattcaatatgtaatccttggattggcgcaacaaacttgaatggaacaaagaaacaaagatctaacaatt |
4343234 |
T |
|
| Q |
401 |
cagttattcttgaattggagcaacgaattc |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
4343233 |
cagttattcttgaattggagcaacgaattc |
4343204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 425 - 637
Target Start/End: Complemental strand, 4343841 - 4343629
Alignment:
| Q |
425 |
gaattcattcaaagaaaatgattaagcaactttcacatgtcaataatcattatatgactcatgcctaatgagtacaagattcttctaaagtaaataagaa |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4343841 |
gaattcattcaaagaaaatgattaagcaactttcacatgtcaataatcattatatgactcatgcctaatgagtacaagattcttctaaagtaaataagaa |
4343742 |
T |
|
| Q |
525 |
gatatgtattaaatcattaattggattaaaattttagtccaactcagatttaaattacgtgcacatgcagccaaagttttaaatcatagtagtggccacg |
624 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4343741 |
gatatgtattaaatcattaattggattaaaattttagtccaactcagatttaaattacgtgcacatgcagccaaagttttaaatcatagtagtggccacg |
4343642 |
T |
|
| Q |
625 |
ttgttgtccttaa |
637 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4343641 |
ttgttgtccttaa |
4343629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 191 - 306
Target Start/End: Complemental strand, 4361583 - 4361469
Alignment:
| Q |
191 |
atggacacattaattcaaatgagaaagtagaaaatgtacagtgtttcaagctcagataaggactggattgctgaagagagctgaccctccaatttcaagc |
290 |
Q |
| |
|
||||||||||||||||||| ||||| | |||||||||||| ||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||| |
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|
| T |
4361583 |
atggacacattaattcaaacgagaa-gcagaaaatgtacaatgtttcaagttcagataaggattggattgctgaagatagctgaccctccaaactcaagc |
4361485 |
T |
|
| Q |
291 |
taggtagtttcctgaa |
306 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
4361484 |
caagtagtttcctgaa |
4361469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 12140641 - 12140677
Alignment:
| Q |
36 |
tcaatcgtggtcgcagagacatcaaaaactttgatgt |
72 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||| |
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|
| T |
12140641 |
tcaatcgtgatcgcagagacatcaaaaaccttgatgt |
12140677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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