View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-6-16 (Length: 623)
Name: J5-6-16
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-6-16 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 75 - 623
Target Start/End: Complemental strand, 55288216 - 55287668
Alignment:
| Q |
75 |
attaatacgcaaaacagtagataaaaagtttgcatcctgtacccatgaacaacctgtcaatttcaataacccctttacatcttcnnnnnnnnnnnnnnnn |
174 |
Q |
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| T |
55288216 |
attaatacgcaaaacagtagataaaaagtttgcatcctgtacccatgaacaacctgtcaatttcaataacccctttacatcttcaaaaaaaacaaaaaaa |
55288117 |
T |
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| Q |
175 |
cttcacatatttcatgtggtctatagtacaaaactgcactgcatgccttagacccagcaatagcacagtgtgaataaggggttcaccattaggattttcc |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55288116 |
cttcacatatttcatgtggtctatagtacaaaactgcactgcatgccttagacccaacaatagcacagtgtgaataaggggttcaccattaggattttcc |
55288017 |
T |
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| Q |
275 |
aaagggacaactacttgctagaaagtgtcaaaaggagaccatagtgatcgctgggcaaaacagggcataccagttgtttgatctcgcctcttactttctt |
374 |
Q |
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| T |
55288016 |
aaagggacaactacttgctagaaagtgtcaaaaggagaccatagtgatcgctgggcaaaacagggcataccagttgtttgatctcgcctcttactttctt |
55287917 |
T |
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| Q |
375 |
ctctttgttatatgaaacaccaggtatttcatccatcccaatcatgtcaatattgtttatcttaaaatcacgtaaacgacaaacaaaacgatccaatcgc |
474 |
Q |
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| T |
55287916 |
ctctttgttatatgaaacaccaggtatttcatccatcccaatcatgtcaatattgcttatcttaaaatcacgtaaacgacaaacaaaacgatccaatcgc |
55287817 |
T |
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| Q |
475 |
ttttggagagtacgattgcctgtcaacatttgggttgacttggtatcatatgtcccaccagcttcatttggtcttagtacagaccaggcatcaagccncc |
574 |
Q |
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| T |
55287816 |
ttttggagagtacgattgcctgtcaacatttggtttgacttggtatcatatgtccaaccagcttcatttggtcttagtacagaccaggcatcaagccacc |
55287717 |
T |
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| Q |
575 |
cgtcttgcnaaggatattgaccatccnttttgtcatcccngttcctatc |
623 |
Q |
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| T |
55287716 |
cgtcttgcaaaggatattgaccatcctttttgtcatcccagttcatatc |
55287668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 55287490 - 55287411
Alignment:
| Q |
1 |
aagttctcttcccattatagagttgctaaatgatttggcggagaaagatttcaccggcagtttgcttaactgaaattaat |
80 |
Q |
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| T |
55287490 |
aagttctcttcccattatagagttgctaaatgatttggcggagaaagatttcaccggcagtttgcttaactgaaattaat |
55287411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 2606632 - 2606687
Alignment:
| Q |
25 |
gctaaatgatttggcggagaaagatttcaccggcagtttgcttaactgaaattaat |
80 |
Q |
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| T |
2606632 |
gctaaatgagttggtggagaaagatttcacaggtagtttgcttaactgaaattaat |
2606687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 10294206 - 10294156
Alignment:
| Q |
25 |
gctaaatgatttggcggagaaagatttcaccggcagtttgcttaactgaaa |
75 |
Q |
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| T |
10294206 |
gctaaatgagttggcggggaaagatttcacaggtagattgcttaactgaaa |
10294156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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