View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-6-31 (Length: 394)
Name: J5-6-31
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-6-31 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 10874479 - 10874097
Alignment:
| Q |
1 |
ttatttgtggacgatagctttattttctttcgggaaaatganggagaggctcaacatcgtcatcatatgttgaatgtgtatgcngatgcttcagggcaat |
100 |
Q |
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| T |
10874479 |
ttatttgtggacgatagctttattttctttcgggaaaatgagggagaggctcaacatcgtcatcatatgttgaatgtgtatgctgatgcttcagggcaat |
10874380 |
T |
|
| Q |
101 |
gcntaaatatttaacattactcggatctttgaagcttgagaaagtattgggacaggtaagtatctcggtcttccttccatcattggtagaagcaagangt |
200 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
10874379 |
gcataaatatttaacattactcggatctttgaagcttgagaaagtattgggacaggtaagtatctcggtcttccttccatcattggtagaagcaagaggt |
10874280 |
T |
|
| Q |
201 |
ctatctttaattacataaaagatagagtttggaagagaatatctagctggagtagcataatgttgtcacaagcaggtcgtgaattattgattaagttttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10874279 |
ctatctttaattacataaaagatagagtttggaagagaatatctagctggagtagcataatgttgtcacaagcaggtcgtgaattattgattaagttttg |
10874180 |
T |
|
| Q |
301 |
tggctcaagcaatacctttgtattgtatgaatgcatttcttatgcctaagacacttgcaaacgagattgaaaaaatgattaat |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10874179 |
tggctcaagcaatacctttgtattgtatgaatgcatttcttatgcctaagacacttgcaaacgagattgaaaaaatgattaat |
10874097 |
T |
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