View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-6-54 (Length: 387)
Name: J5-6-54
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-6-54 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 3225029 - 3224647
Alignment:
| Q |
1 |
aggatggtcttgttgatattatccaaggttctactggtatcacaatctcaaattgtcacatgacaaaacataatgatgtaagtnnnnnnntggctactat |
100 |
Q |
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| T |
3225029 |
aggatggtcttgttgatattatccaaggttctactggtatcacaatctcaaattgtcacatgacaaaacataatgatgtaagtaaaaaaatggctactat |
3224930 |
T |
|
| Q |
101 |
tgcatgatatattaattaatataaaatnnnnnnnntgaaattttatatgatatttaatttctgcnaaatgtatatacatggcctacnttacttaaaattt |
200 |
Q |
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| T |
3224929 |
tgcatgatatattaattaatataaaataaaaaaaatgaaattttatatgatatttaatttctgcaaaatgtatatacatggcctacattacttaaaattt |
3224830 |
T |
|
| Q |
201 |
atgggtccgtctctgattgcaggttatgttatttggagctagtgattcatacnctggngacaagcttatgcnaataacagtagcattcaaccactttgga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3224829 |
atgggtccgtctctgattgcaggttatgttatttggagctagtgattcatacactggtgacaagcttatgcaaataacagtagcattcaaccactttgga |
3224730 |
T |
|
| Q |
301 |
caaggattgattcnaanaatgccnaggtgcngatatggttttgttcatgttttgaacaatgacnatacncnttggataatgta |
383 |
Q |
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| T |
3224729 |
caaggattgattcaaagaatgccaaggtgcagatatggttttgttcatgttttgaacaatgactatactcattggataatgta |
3224647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 221 - 362
Target Start/End: Original strand, 2045640 - 2045781
Alignment:
| Q |
221 |
aggttatgttatttggagctagtgattcatacnctggngacaagcttatgcnaataacagtagcattcaaccactttggacaaggattgattcnaanaat |
320 |
Q |
| |
|
|||| ||||| ||||||||||||||| |||| | |||||| |||||| | | ||||| ||||||||||| || |||||||||||||||| || ||| |
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| T |
2045640 |
aggtgatgttgtttggagctagtgatacatatcaagatgacaagattatgcaagtcacagttgcattcaaccatttcggacaaggattgattcaaagaat |
2045739 |
T |
|
| Q |
321 |
gccnaggtgcngatatggttttgttcatgttttgaacaatga |
362 |
Q |
| |
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||| || ||| ||| || ||| | ||||||||||||||||| |
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|
| T |
2045740 |
gccaagatgcagatggggatttttccatgttttgaacaatga |
2045781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 2045439 - 2045521
Alignment:
| Q |
1 |
aggatggtcttgttgatattatccaaggttctactggtatcacaatctcaaattgtcacatgacaaaacataatgatgtaagt |
83 |
Q |
| |
|
||||||||||||||||| | || ||||| ||||||| |||| ||||||||||| |||||||| |||||||| ||||||||| |
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|
| T |
2045439 |
aggatggtcttgttgatgtcattcaaggctctactgcagtcaccatctcaaattgccacatgaccaaacataacgatgtaagt |
2045521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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