View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-6-56 (Length: 354)
Name: J5-6-56
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-6-56 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 155 - 354
Target Start/End: Complemental strand, 33355202 - 33355003
Alignment:
| Q |
155 |
ctccatgctagaaccaaaagaagaagaaaaacatgtatgtaatcttgaacttgtctaatatatgtatatttttagaatgttttacggttgaacttatcaa |
254 |
Q |
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| T |
33355202 |
ctccatgctagaaccaaaagaagaagaaaaacatgtatgtaatcttgaacttgtctaatatatgtatatttttagaatgttttacggttgaacttatcaa |
33355103 |
T |
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| Q |
255 |
ttttagtgaaatgataaattttatatcngtnnnnnnnngattaacaatttgacagtgacatgctaaattctaagcttgagttattcttacgctagcattg |
354 |
Q |
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| T |
33355102 |
ttttagtgaaatgataaattttatatcagtaaaaaaaagattaacaatttgacagtgacatgctaaattctaagcttgagttattcttacgctagcattg |
33355003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 33355356 - 33355263
Alignment:
| Q |
1 |
atattcaatatttgtttagcctgatttgctttctttagacttcattgtatatatattgtttatctctttagcataaagaatcatatgttgggac |
94 |
Q |
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| T |
33355356 |
atattcaatatttgtttagcctgatttgctttctttagacttcattgtatatatattgtttatctctttagcataaagaatcatatgttgggac |
33355263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 41530326 - 41530241
Alignment:
| Q |
1 |
atattcaatatttgtttagcctgatttgctttctttagacttcattgtatatatattgtttatctctttagcataaagaatcatat |
86 |
Q |
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| T |
41530326 |
atattcaatcatcgtttagcctaatttgctttctttagaatttaatgtatatatattgttgatctctttgacatcaaaaatcatat |
41530241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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