View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-6-57 (Length: 463)
Name: J5-6-57
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-6-57 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 21 - 463
Target Start/End: Original strand, 33354461 - 33354903
Alignment:
| Q |
21 |
caattgccaaacacaacaaacaaaacctagaacaagactcaacatgcaattcttgtcgcagaaaacacaatatttataataaatttctcaagcaacaatt |
120 |
Q |
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| T |
33354461 |
caattgccaaacacaacaaacaaaacctagaacaagactcaacatgcaattcttgtcgcagaaaacacaatatttataataaatttctcaagcaacaatt |
33354560 |
T |
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| Q |
121 |
taaatcagactaaaaagacttttggattttataacatatataagcaacagtttaaatcggactaaaaagacttttggattctataacatatatgagttga |
220 |
Q |
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| T |
33354561 |
taaatcagactaaaaagacttttggattttataacatatataagcaacagtttaaatcggactaaaaagacttttggattctataacatatatgagttga |
33354660 |
T |
|
| Q |
221 |
aactctcagagttttgacatttatattcatcgattaaatcaacttaannnnnnnnncatttccctaacgaattaaaattttggcatttaaaatttaagat |
320 |
Q |
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| T |
33354661 |
aactctcagagttttgacatttatattcatcgattaaatcaacttaatttttttttcatttccctaacgaattaaaattttggcatttaaaatttaagat |
33354760 |
T |
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| Q |
321 |
tgaatgagtgtatatagagngcttctagatgcatttaatctgatcactttagtatnataatgattgngtgtgaaacnatcttattttttgttttcaanaa |
420 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||| || |
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| T |
33354761 |
tgaatgagtgtatatagagtgcttctagatgcatttaatctgatcactttagtataataatgattgtgtgtgaaactatcttattttttgttttcaaaaa |
33354860 |
T |
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| Q |
421 |
atatagagtcgngtgaaatttagatgtaattattaaaacntat |
463 |
Q |
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| T |
33354861 |
atatagagtcgtgtgaaatttagatgtaattattaaaacatat |
33354903 |
T |
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