View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-6-66 (Length: 546)
Name: J5-6-66
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-6-66 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Original strand, 48317219 - 48317763
Alignment:
| Q |
1 |
caatatgcctatgatctgttgtggcttggatagtatacttccttctaagaacggagactttctgttgcacgatacatgtctgcagtttcagcaaaccatc |
100 |
Q |
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| T |
48317219 |
caatatgcctatgatctgttgtggcttggatagtatacttccttctaagaacggagactttctgttgcacgatacatgtctgcagtttcagcaaaccatc |
48317318 |
T |
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| Q |
101 |
gcctcttctaacctgtatccatatagactccacacgtcggttgatcttgccaagctgagaactaaactcagaattggtcttgaccgatacaaaggattta |
200 |
Q |
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| T |
48317319 |
gcctcttctaacctgtatccatatagactccacacgtcggttgatcttgccaagctgagaactaaactcagaattggtcttgaccgatacaaaggattta |
48317418 |
T |
|
| Q |
201 |
tcagcgtcgtcgacatcatgttcagagaatccttcaaggatgtctcctggtaatggcatgctctcatcccattcatcagctacctcttgcttcacttgtt |
300 |
Q |
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| T |
48317419 |
tcagcgtcgtcgacatcatgttcagagaatccttcaaggatgtctcctggtaatggcatgctctcatcccattcatcagctacctcttgcttcacttgtt |
48317518 |
T |
|
| Q |
301 |
tcacacaaacaagtgtttgatctgaggcagccatttcctcctaggatatgaaactgaaaattgggtcccagctagttatcctagtaaaaatactagtgtg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
48317519 |
tcacacaaacaagtgtttgatctgaggcagccatttcctcctaggatatgaaactgaaaattgggtccaagctagttatcctagt-aaaatactagtgtg |
48317617 |
T |
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| Q |
401 |
acatccttgaagttaaatgggtctatatgcttttaacatatgttctttcttggggcccataaaatatccgcccttcattgttctgataagac-aacaccc |
499 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||| || ||||||||||||||||||||| |||||| |
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| T |
48317618 |
acat-cttgaagttaaatgtgtctatatgcttttaacatatgttctttcttgtggcctataaaatat-cgtccttcattgttctgataagacaaacacca |
48317715 |
T |
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| Q |
500 |
agaggcc-aagctatggccggcacccaatttctcattaccggntgcaa |
546 |
Q |
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| T |
48317716 |
agaggccaaagctatggccggcaccaaatttctcattaccggctgcaa |
48317763 |
T |
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