View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-6-69 (Length: 510)
Name: J5-6-69
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-6-69 |
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| [»] scaffold0015 (7 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 308; Significance: 1e-173; HSPs: 7)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 56 - 445
Target Start/End: Complemental strand, 38005 - 37618
Alignment:
| Q |
56 |
atctnccaccaagttgagtgaatggagtgagagttccactgatnagagaaccnttctcattttgtttgaaagangaaggcatagcnggccatacaaaagc |
155 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
38005 |
atctaccaccaagttgagtgaatggagtgagagttccactgataagagaaccattctcattttgtttgaaagatgaaggcatagcaggccatacaaaagc |
37906 |
T |
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| Q |
156 |
cggtctttcnatcggaaccattggaggagaagcttctccnttaagaaccatcaatacagttntcnttgatggtctttcatggggatttggatgacaacaa |
255 |
Q |
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||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||| |
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| T |
37905 |
cggtctttcaatcggaaccattggaggagaagcttctccattaagaaccatcaatacagttttcattgatggtctttcatgtggatttggatgacaacaa |
37806 |
T |
|
| Q |
256 |
gacgacccnagaataagcacagtttcaacctttncaatttctncctcttcnctacttatcctatcatcaactgcactaactntttttccctctccataaa |
355 |
Q |
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||| |||| |||||||||||| ||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37805 |
gacaacccaagaataagcacaatttcaaccttttcaatttcttcctcttcactacttatcctatcatcaactgcactaactatttttccctctccataaa |
37706 |
T |
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| Q |
356 |
gtncccaaacccaatacacaatactgtatttataatcntcttgtgcatacatntttccttggtctttttccacaccacaacttcnaaaac |
445 |
Q |
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| T |
37705 |
gttcccaaacccaatacacaatactgtatttataatcatcttgtgcatacatattt-cttggtctttttccaca-cacaacttccaaaac |
37618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 56 - 445
Target Start/End: Original strand, 18418 - 18805
Alignment:
| Q |
56 |
atctnccaccaagttgagtgaatggagtgagagttccactgatnagagaaccnttctcattttgtttgaaagangaaggcatagcnggccatacaaaagc |
155 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||||| ||| |||||||| |
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| T |
18418 |
atctgccactaagttgagtgaatggagtgagagttccactgataagagaaccattttcattttgtttgaaagatgaaggcatagcattccaaacaaaagc |
18517 |
T |
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| Q |
156 |
cggtctttcnatcggaaccattggaggagaagcttctccnttaagaaccatcaatacagttntcnttgatggtctttcatggggatttggatgacaacaa |
255 |
Q |
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||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||| || ||| |||||||||||| |||||||||||||||||| |
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| T |
18518 |
cggtctttcaatcggaaccattggaggagaagcttctccatttagaaccatcaaaacagttttcattgttggtctttcatgtggatttggatgacaacaa |
18617 |
T |
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| Q |
256 |
gacgacccnagaataagcacagtttcaacctttncaatttctncctcttcnctacttatcctatcatcaactgcactaactntttttccctctccataaa |
355 |
Q |
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||| |||| |||||||||||| ||||||||||| || |||| ||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
18618 |
gacaacccaagaataagcacaatttcaaccttttcagtttcagcctcttcactacttatcctatcatcaactgcactaactttttttccctcttcataaa |
18717 |
T |
|
| Q |
356 |
gtncccaaacccaatacacaatactgtatttataatcntcttgtgcatacatntttccttggtctttttccacaccacaacttcnaaaac |
445 |
Q |
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| T |
18718 |
gctcccaaacccaatacacaatactatatttataatcatcttgtgcatacatattt-cttggtctttttccaca-cacaacttccaaaac |
18805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 56 - 284
Target Start/End: Complemental strand, 12339 - 12111
Alignment:
| Q |
56 |
atctnccaccaagttgagtgaatggagtgagagttccactgatnagagaaccnttctcattttgtttgaaagangaaggcatagcnggccatacaaaagc |
155 |
Q |
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|||| |||| ||||| |||||| ||||||||||||||| |||| ||||||| | ||| || ||||||||| |||||||| || ||||| |||||||| |
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| T |
12339 |
atcttccactaagttcagtgaacggagtgagagttccattgataagagaactatcttcaccttctttgaaagatgaaggcatggctggccaaacaaaagc |
12240 |
T |
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| Q |
156 |
cggtctttcnatcggaaccattggaggagaagcttctccnttaagaaccatcaatacagttntcnttgatggtctttcatggggatttggatgacaacaa |
255 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| || ||||||| |||| || |||||||||||||||||| |
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| T |
12239 |
cggtctttcaatcggaaccattggaggagaagcttctccattaagaaccatcaaaacagttttcattgatggccttttatttggatttggatgacaacaa |
12140 |
T |
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| Q |
256 |
gacgacccnagaataagcacagtttcaac |
284 |
Q |
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| | |||| | |||||||||| ||||||| |
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| T |
12139 |
gccaaccctaaaataagcacaatttcaac |
12111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 329 - 429
Target Start/End: Complemental strand, 12045 - 11946
Alignment:
| Q |
329 |
cactaactntttttccctctccataaagtncccaaacccaatacacaatactgtatttataatcntcttgtgcatacatntttccttggtctttttccac |
428 |
Q |
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||||||| ||||||| | ||||||||| |||||||||||||||||||||| | |||||| || ||||||||||||| ||||| |||||||||||||| |
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| T |
12045 |
cactaacaatttttccatttccataaagctcccaaacccaatacacaatactatttttatagtcatcttgtgcatacacatttcc-tggtctttttccac |
11947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 19222 - 19260
Alignment:
| Q |
1 |
tgagtttcaccaagtttttgtggtgaaggcttccanttg |
39 |
Q |
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| T |
19222 |
tgagtttcaccaagtttttgtggtgaaggcttccaattg |
19260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 37201 - 37163
Alignment:
| Q |
1 |
tgagtttcaccaagtttttgtggtgaaggcttccanttg |
39 |
Q |
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| T |
37201 |
tgagtttcaccaagtttttgtggtgaaggcttccaattg |
37163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 11514 - 11476
Alignment:
| Q |
1 |
tgagtttcaccaagtttttgtggtgaaggcttccanttg |
39 |
Q |
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||||||||||||||||||||||||||||||| ||| ||| |
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| T |
11514 |
tgagtttcaccaagtttttgtggtgaaggctaccaattg |
11476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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