View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-6-80 (Length: 787)
Name: J5-6-80
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-6-80 |
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Alignment Details
Target: chr4 (Bit Score: 655; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 1 - 675
Target Start/End: Complemental strand, 48440640 - 48439968
Alignment:
| Q |
1 |
tatatatcatgaatttgtttttataaaattctataccatgatattgtaacaaacatgcagcaaatattccctaggaagaccatgcaacaaacattcccta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48440640 |
tatatatcatgaatttgtttttataaaattctataccatgatattgtaacaaacatgcagcaaatattccctaggaagaccatgcaacaaacattcccta |
48440541 |
T |
|
| Q |
101 |
ggaaaacgaatacttagtggttgataaaaataacataaaaattgtacaacgcattccatctactataaaacaagagaaacaagggcctagaagtattgtc |
200 |
Q |
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| T |
48440540 |
ggaaaacgaatacttagtggttgataaaaataacataaaaattgtacaacgcattccatctactataaaacaagagaaacaagggcctagaagtattgtc |
48440441 |
T |
|
| Q |
201 |
atctccctaatgcaaaaagtcatcacttgataattttttctttcattgctctttcaacccttagtaggagcctctgctgttagagagctagagaagtgga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48440440 |
atctccctaatgcaaaaagtcatcacttgataattttttctttcattgctctttcaacccttagtaggagcctctgctgttagagagctagagaagtgga |
48440341 |
T |
|
| Q |
301 |
gctcctcctagggctggttgaaagaaaaatttgaaagaggaagagaccaattttatcgttttggtcataatgtcgtctgacaatctatttgaagaactca |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
48440340 |
gctcctcctagggctggttgaaagaaaaatttgaaagaggaagagacaaattttatcgtttt-gtcataatgtcgtctgacaatctatttgaagaactca |
48440242 |
T |
|
| Q |
401 |
aggaatgagaatgttgatctcgtaagacaaaaatgacacgcgtaatgccatgcatggttttaaattgtggtttgcaacaacattgaactttatacatttc |
500 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48440241 |
a-gaatgagaatgttgatctcgtaagacaaaaatgacacgcgtaatgccatgcatggttttaaattgtggtttgcaacaacattgaactttatacatttc |
48440143 |
T |
|
| Q |
501 |
aactgtattagctgtacttttcctcaatataaatgtttgatgctgcgaccacaatttaaaaccacgatgtcatgcattggcatgattattaatttttaat |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48440142 |
aactgtattagctgtacttttcctcaatataaatgtttgatgctgcgaccacaatttaaaaccacgatgtcatgcattggcatgattattaatttttaat |
48440043 |
T |
|
| Q |
601 |
tacttattttcctttgtaatgacaattaagttgttacgttgcatgtgtatatgtgcaggaaaacattccaattga |
675 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48440042 |
tacttattttcctttgtaatgacaattaagttgttacgttgcatgtgtatatgtgcaggaaaacattccaattga |
48439968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 666 - 787
Target Start/End: Complemental strand, 48440757 - 48440636
Alignment:
| Q |
666 |
ttccaattgaaccctcccaacaaattttgtatcccatcattaaattgttctcccaaatttagcatgtaattgaccaccaacaaaaatatctttctttttt |
765 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48440757 |
ttccaattgaaccctcccaacaaattttgtatcccatcattaaattgttctcccaaatttagcatgtaattgaccaccaacaaaaatatctttctttttt |
48440658 |
T |
|
| Q |
766 |
acacaacaaaaatagcttatat |
787 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
48440657 |
acacaacaaaaatagcttatat |
48440636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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