View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-6-93 (Length: 378)
Name: J5-6-93
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-6-93 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 33177934 - 33178246
Alignment:
| Q |
1 |
acctattcaaattggaaatggagatattattgaccataaccctttaaccatgtctgatgaacacattttggaagagatttattcaactcatgtccatagt |
100 |
Q |
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| T |
33177934 |
acctattcaaattggaaatggagatattattgaccataaccctttaaccatgtctgatgaacacattttggaagagatttattcaactcatgtccatagt |
33178033 |
T |
|
| Q |
101 |
gacactaagtttgatgctgaatatcttttcaacattgctggcaacatccttacacgttcaacccatgttgttgataactttgtgcaagtatgtgtatatt |
200 |
Q |
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| T |
33178034 |
gacactaagtttgatgctgaatatcttttcaacattgctggcaacatccttacacgttcaacccatgttgttgataactttgtgcaagtatgtgtatatt |
33178133 |
T |
|
| Q |
201 |
tgcatctatctctccattctttttattatatagtatactgcttctaactaaataatgttaacttgtttgtttatacgtagggacatgaatatcaagcaag |
300 |
Q |
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| T |
33178134 |
tgcatctatctctccattctttttattatatagtatactgcttctaactaaataatgttaacttgtttgtttatacgtagggacatgaatatcaagcaag |
33178233 |
T |
|
| Q |
301 |
tgtggagcaattg |
313 |
Q |
| |
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||||||||||||| |
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| T |
33178234 |
tgtggagcaattg |
33178246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 309
Target Start/End: Original strand, 33155148 - 33155448
Alignment:
| Q |
3 |
ctattcaaattggaaatggagatattattgaccataaccctttaaccatgtctgatgaacacattttggaagagatttattcaactcatgtccatagtga |
102 |
Q |
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| T |
33155148 |
ctattcacattggaaatggagatattattgaccataaccctttaaccatgtctgatgaacacattttggaagagatttattcaactcatgtccatagtga |
33155247 |
T |
|
| Q |
103 |
cactaagtttgatgctgaatatcttttcaacattgctggcaacatccttacacgttcaacccatgttgttgataactttgtgcaagtatgtgtatatttg |
202 |
Q |
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| T |
33155248 |
cactaagtttgatgctgaatatcttttcaacattgctggcaacatccttacacgttcaacccatgttgttgataactttgtgcaagtatgtatatatttg |
33155347 |
T |
|
| Q |
203 |
catctatctctccattctttttattatatagtatactgcttctaactaaataatgttaacttgtttgttta-tacgtagggacatgaatatcaagcaagt |
301 |
Q |
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|| |||| | ||| || || |||| ||||||||||||| || | ||||||||||||||||||| ||| ||| ||||||||||| | ||| ||||| |
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| T |
33155348 |
cacctattt----att-ttctttttatgtagtatactgcttttagttgaataatgttaacttgtttgattattac--agggacatgaacaacaaacaagt |
33155440 |
T |
|
| Q |
302 |
gtggagca |
309 |
Q |
| |
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||||||| |
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| T |
33155441 |
ctggagca |
33155448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 33137385 - 33137549
Alignment:
| Q |
29 |
attgaccataaccctttaaccatgtctgatgaacacattttggaagagatttattcaactcatgtccatagtgacactaagtttgatgctgaatatcttt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33137385 |
attgaccataaccctttaaccatgtctgatgaacacattttggaagagatttatgtaactcatgtccatagtgacactaagtttgatgctgaatctcttt |
33137484 |
T |
|
| Q |
129 |
tcaacattgctggcaacatccttacacgttcaacccatgttgttgataactttgtgcaagtatgt |
193 |
Q |
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| T |
33137485 |
tcaacattgctgggaacatccttacacgttcaacccatgttgttgataacgttctgcaagtatgt |
33137549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 33290528 - 33290360
Alignment:
| Q |
24 |
atattattgaccataaccctttaaccatgtctgatgaacacattttggaagagatttattcaactcatgtccatagtgacactaagtttgatgctgaata |
123 |
Q |
| |
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|||||||| || |||||||||| | |||||||||| ||| ||| ||| |||||||||||||| ||||||||||||||||| |||||||||| ||||| |
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| T |
33290528 |
atattattcacaataaccctttgatcatgtctgatatacaaattatgggggagatttattcaacccatgtccatagtgacaccaagtttgatgttgaatc |
33290429 |
T |
|
| Q |
124 |
tcttttcaacattgctggcaacatccttacacgttcaacccatgttgttgataactttgtgcaagtatg |
192 |
Q |
| |
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| T |
33290428 |
tcttttcaacattgctgcaaacattcttaggcgttcaacctatattgttgaaaacgttgtgcaagtatg |
33290360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 308 - 365
Target Start/End: Original strand, 33176784 - 33176840
Alignment:
| Q |
308 |
caattgttgtgaggcatctcaaccattttaataatcctttcaattancataagatatt |
365 |
Q |
| |
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| T |
33176784 |
caattgttgtgaggcatctcaaccattttaataat-ctttcaattaacataagatatt |
33176840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 33121838 - 33121757
Alignment:
| Q |
38 |
aaccctttaaccatgtctgatgaacacattttggaagagatttattcaactcatgtccatagtgacactaagtttgatgctg |
119 |
Q |
| |
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||||| ||||||||||||||||| || |||||||| | ||||| || ||||||||||| |||||||| || |||||||||| |
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| T |
33121838 |
aacccattaaccatgtctgatgaccagattttggatcaaatttactccactcatgtccacagtgacacaaaatttgatgctg |
33121757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 6679763 - 6679887
Alignment:
| Q |
53 |
tctgatgaacacattttggaagagatttattcaactcatgtccatagtgacactaagtttgatgctgaatatcttttcaacattgctggcaacatcctta |
152 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
6679763 |
tctgatgaacacattttggaagagatttattcaactcatgtctatagtgatactaagtttgatgctgaatatattttcaacattgctggaaacatccttg |
6679862 |
T |
|
| Q |
153 |
cacgttcaacccatgttgttgataa |
177 |
Q |
| |
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| T |
6679863 |
tgcgttcaatccatgttgttgataa |
6679887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 149
Target Start/End: Complemental strand, 55125082 - 55124989
Alignment:
| Q |
53 |
tctgatgaacacattttggaagagatttattcaactcatgtccatagtgacactaagtttgatgctgaatatcttttcaacattgctggcaacatcc |
149 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
55125082 |
tctgatgaacacattttacaagagatttattcaact---gtccacagtgatgctaagtttgacgctgaatatcttttcaacattgctggaaacatcc |
55124989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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