View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: J5-60 (Length: 309)

Name: J5-60
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] J5-60
J5-60
[»] chr8 (21 HSPs)
chr8 (1-309)||(32927627-32927936)
chr8 (237-307)||(44141093-44141163)
chr8 (265-309)||(15677857-15677901)
chr8 (206-309)||(16972105-16972208)
chr8 (240-302)||(37684380-37684442)
chr8 (205-283)||(42455852-42455930)
chr8 (265-309)||(35494990-35495034)
chr8 (242-309)||(4662944-4663011)
chr8 (243-309)||(10367973-10368039)
chr8 (221-302)||(26100194-26100276)
chr8 (210-297)||(7644510-7644596)
chr8 (206-309)||(13384695-13384798)
chr8 (240-299)||(38868473-38868532)
chr8 (231-305)||(11572503-11572577)
chr8 (248-300)||(1836262-1836315)
chr8 (218-255)||(7533750-7533787)
chr8 (206-283)||(35495201-35495278)
chr8 (240-284)||(4950459-4950503)
chr8 (245-300)||(11791783-11791839)
chr8 (206-298)||(26668493-26668585)
chr8 (265-309)||(32994283-32994327)
[»] chr4 (26 HSPs)
chr4 (206-309)||(35065004-35065107)
chr4 (220-309)||(32818411-32818500)
chr4 (237-307)||(50061671-50061741)
chr4 (210-302)||(54705438-54705531)
chr4 (207-297)||(25318989-25319080)
chr4 (240-305)||(26617443-26617508)
chr4 (217-302)||(46344880-46344964)
chr4 (221-302)||(49138811-49138891)
chr4 (219-309)||(9134564-9134654)
chr4 (219-300)||(33560620-33560702)
chr4 (247-300)||(11271587-11271641)
chr4 (221-298)||(43868092-43868169)
chr4 (265-309)||(8604663-8604707)
chr4 (221-309)||(9064187-9064275)
chr4 (265-305)||(30357512-30357552)
chr4 (265-309)||(55187003-55187047)
chr4 (243-298)||(29779106-29779161)
chr4 (210-309)||(39733679-39733777)
chr4 (221-302)||(8330071-8330153)
chr4 (206-292)||(49138894-49138979)
chr4 (205-302)||(22250166-22250263)
chr4 (242-307)||(41370053-41370118)
chr4 (206-298)||(16551898-16551990)
chr4 (265-305)||(30357647-30357687)
chr4 (204-284)||(48045767-48045847)
chr4 (242-302)||(53713609-53713669)
[»] chr6 (16 HSPs)
chr6 (206-298)||(5724682-5724774)
chr6 (206-309)||(765427-765530)
chr6 (206-309)||(4910849-4910952)
chr6 (206-302)||(26280546-26280642)
chr6 (240-309)||(16540082-16540151)
chr6 (208-307)||(6654133-6654232)
chr6 (250-309)||(7952750-7952809)
chr6 (231-309)||(30927009-30927087)
chr6 (210-298)||(25195418-25195504)
chr6 (206-309)||(1485187-1485291)
chr6 (221-285)||(2008567-2008631)
chr6 (265-309)||(6895991-6896035)
chr6 (206-285)||(2008403-2008482)
chr6 (230-296)||(35098228-35098294)
chr6 (219-308)||(35098500-35098589)
chr6 (245-309)||(852512-852576)
[»] scaffold0168 (1 HSPs)
scaffold0168 (206-309)||(31767-31870)
[»] chr1 (18 HSPs)
chr1 (206-302)||(28083936-28084032)
chr1 (206-309)||(31362246-31362345)
chr1 (210-302)||(6021749-6021841)
chr1 (217-305)||(1514296-1514383)
chr1 (206-290)||(47321966-47322050)
chr1 (267-302)||(11049252-11049287)
chr1 (210-303)||(32088620-32088713)
chr1 (272-309)||(7524120-7524157)
chr1 (269-309)||(28287377-28287417)
chr1 (269-309)||(51500875-51500915)
chr1 (242-309)||(3016140-3016206)
chr1 (266-309)||(30557505-30557548)
chr1 (219-300)||(12655198-12655280)
chr1 (268-309)||(36780157-36780199)
chr1 (240-300)||(18325439-18325500)
chr1 (240-293)||(30220267-30220320)
chr1 (252-309)||(48549053-48549110)
chr1 (221-309)||(30995998-30996086)
[»] chr5 (15 HSPs)
chr5 (206-309)||(18851123-18851226)
chr5 (248-309)||(9818717-9818778)
chr5 (206-302)||(6951353-6951448)
chr5 (208-292)||(27374349-27374433)
chr5 (242-299)||(38845761-38845819)
chr5 (206-302)||(34250399-34250495)
chr5 (206-309)||(14299271-14299374)
chr5 (206-309)||(22226277-22226380)
chr5 (265-309)||(22572445-22572489)
chr5 (245-305)||(31906239-31906299)
chr5 (265-309)||(38845443-38845487)
chr5 (210-305)||(11648027-11648122)
chr5 (210-309)||(11132826-11132926)
chr5 (240-309)||(36639912-36639981)
chr5 (245-300)||(3970450-3970506)
[»] chr3 (16 HSPs)
chr3 (206-307)||(1441424-1441525)
chr3 (206-308)||(44958648-44958750)
chr3 (207-302)||(32523388-32523484)
chr3 (240-302)||(7717369-7717431)
chr3 (240-309)||(35058336-35058405)
chr3 (265-309)||(35058067-35058111)
chr3 (219-299)||(41115413-41115493)
chr3 (219-309)||(36302139-36302227)
chr3 (210-309)||(54596763-54596862)
chr3 (242-299)||(23290269-23290327)
chr3 (209-259)||(48410903-48410953)
chr3 (240-309)||(5406881-5406950)
chr3 (205-309)||(35264452-35264556)
chr3 (265-309)||(40147891-40147935)
chr3 (210-282)||(41596204-41596275)
chr3 (206-302)||(44771635-44771731)
[»] chr7 (15 HSPs)
chr7 (210-309)||(41386856-41386955)
chr7 (206-309)||(27571803-27571906)
chr7 (227-300)||(40422754-40422828)
chr7 (205-309)||(45004960-45005064)
chr7 (210-305)||(5489891-5489986)
chr7 (206-309)||(40491519-40491622)
chr7 (223-297)||(36270938-36271012)
chr7 (265-302)||(17111857-17111894)
chr7 (206-302)||(28725100-28725196)
chr7 (206-258)||(12306675-12306727)
chr7 (245-300)||(15903580-15903635)
chr7 (209-252)||(17111819-17111862)
chr7 (225-273)||(23441307-23441355)
chr7 (265-297)||(26984533-26984565)
chr7 (265-309)||(30182337-30182381)
[»] chr2 (19 HSPs)
chr2 (205-298)||(2002747-2002840)
chr2 (206-309)||(10644545-10644647)
chr2 (206-305)||(16518720-16518819)
chr2 (206-309)||(42740918-42741021)
chr2 (219-283)||(680344-680408)
chr2 (206-302)||(30503150-30503246)
chr2 (265-309)||(43501125-43501169)
chr2 (205-299)||(11510893-11510988)
chr2 (240-302)||(31453358-31453420)
chr2 (206-252)||(43501084-43501130)
chr2 (210-259)||(7630361-7630410)
chr2 (240-309)||(22535973-22536042)
chr2 (206-302)||(10618989-10619085)
chr2 (265-299)||(21234576-21234610)
chr2 (263-300)||(44810372-44810410)
chr2 (219-280)||(32777924-32777985)
chr2 (240-309)||(33019197-33019266)
chr2 (240-300)||(37561681-37561742)
chr2 (265-302)||(42982544-42982581)
[»] scaffold0024 (1 HSPs)
scaffold0024 (219-300)||(23643-23724)
[»] scaffold0361 (1 HSPs)
scaffold0361 (240-284)||(14179-14223)


Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 32927627 - 32927936
Alignment:
Q  1 ccaattttgtcggaatcaagtgaaaaaaagttactgattttgtgnnnnnnnnnnnnnnnnn-ggaaaggggggatattcttctccgacgcaacaagctat 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||                  |||||| | |||||||||||||||||||||||||||||    
T  32927627 ccaattttgtcggaatcaagtgaaaaaaagttactgattttgtgttttttttttttttttttggaaagtgtggatattcttctccgacgcaacaagctat 32927726  T
Q  100 aatcaatgatctcaagctctctgtttcagaggttttgtttgtttttgtgctttatgggttttagtggaaagtaatttttcattctgatatgcctgatccc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32927727 aatcaatgatctcaagctctctgtttcagaggttttgtttgtttttgtgctttatgggttttagtggaaagtaatttttcattctgatatgcctgatccc 32927826  T
Q  200 tttcaagtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttg 299  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32927827 tttcaagtagaattgactctgacatgtttggttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttg 32927926  T
Q  300 attatagaat 309  Q
    ||||||||||    
T  32927927 attatagaat 32927936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 237 - 307
Target Start/End: Complemental strand, 44141163 - 44141093
Alignment:
Q  237 tccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattataga 307  Q
    ||||||||||||||||||||||| | | |||||||||||||||| |||||||||||| |||||||| ||||    
T  44141163 tccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtagtttttgattctaga 44141093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 15677901 - 15677857
Alignment:
Q  265 ttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  15677901 ttgattctacttgaagctaggatttatagcttttgattatagaat 15677857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 206 - 309
Target Start/End: Complemental strand, 16972208 - 16972105
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    |||||||||| || |||||| || | |||| || |||||||||||||||||||  | |||||||| || |||||||||| |||||||| |||| ||| ||    
T  16972208 gtagaattgattcagacatgattggatgctatcgagtagaattgattttgccttcagagttgattgtatttgaagctagaatttgtagtttttaatttta 16972109  T
Q  306 gaat 309  Q
    ||||    
T  16972108 gaat 16972105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 37684380 - 37684442
Alignment:
Q  240 agtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgatt 302  Q
    |||||||||||||||| ||| | | |||||||||||||||| |||||||||| ||||||||||    
T  37684380 agtagaattgattttgtctccagaattgattctacttgaagttaggatttgtggcttttgatt 37684442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 283
Target Start/End: Original strand, 42455852 - 42455930
Alignment:
Q  205 agtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagcta 283  Q
    ||||||||||| | |||||||||| ||||||||  ||||| ||||||| |||||| ||| |||||||||||||| ||||    
T  42455852 agtagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 42455930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 35494990 - 35495034
Alignment:
Q  265 ttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||    
T  35494990 ttgattctacatgaagctaggatttgtagcttttgattctagaat 35495034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 4663011 - 4662944
Alignment:
Q  242 tagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    ||||||||||||||| ||   | || |||||||||||||||||||||||||||||||| || ||||||    
T  4663011 tagaattgattttgcatccggaatttattctacttgaagctaggatttgtagcttttgtttctagaat 4662944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 309
Target Start/End: Original strand, 10367973 - 10368039
Alignment:
Q  243 agaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    ||||||||||| ||||| | | ||| |||||||||| ||||||||||| ||||||||||| ||||||    
T  10367973 agaattgatttcgcctccacaattggttctacttgaggctaggatttgcagcttttgattctagaat 10368039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 302
Target Start/End: Complemental strand, 26100276 - 26100194
Alignment:
Q  221 acatgtttagttgctttccagtagaattgattttgc-ctcaatagttgattctacttgaagctaggatttgtagcttttgatt 302  Q
    |||||||| ||||||| | ||||||||||| ||||  ||| | | ||| ||||| ||||||||||||||||||||||||||||    
T  26100276 acatgtttggttgcttccaagtagaattgactttggtctctagaattggttctatttgaagctaggatttgtagcttttgatt 26100194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 297
Target Start/End: Original strand, 7644510 - 7644596
Alignment:
Q  210 aattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttt 297  Q
    |||||| |||||||| ||| |||||||||  |||||||||||| ||  |  | | |||||||||||| ||||||||||||||||||||    
T  7644510 aattgattctgacat-tttggttgctttcgtgtagaattgattatggatttagaattgattctacttaaagctaggatttgtagcttt 7644596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 309
Target Start/End: Complemental strand, 13384798 - 13384695
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    |||||||||| |||||||||||| |||| | || ||| |||||  || |  ||| | | ||||||||| |||||||||  ||||||||||||||||| ||    
T  13384798 gtagaattgattctgacatgtttggttgttgtcgagtcgaatttgttctttctccaaaattgattctatttgaagctaaaatttgtagcttttgattcta 13384699  T
Q  306 gaat 309  Q
    ||||    
T  13384698 gaat 13384695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 299
Target Start/End: Original strand, 38868473 - 38868532
Alignment:
Q  240 agtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttg 299  Q
    |||| |||||||  |||||| | | ||||||||||||||||||| |||||||||||||||    
T  38868473 agtaaaattgatgatgcctctaaaattgattctacttgaagctaagatttgtagcttttg 38868532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 305
Target Start/End: Complemental strand, 11572577 - 11572503
Alignment:
Q  231 ttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    |||||||  ||||||||||||||| | |  ||| |||||| ||||||||||||  |||||||| |||||||||||    
T  11572577 ttgcttttaagtagaattgattttacttacataattgattatacttgaagctaaaatttgtagattttgattata 11572503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 1836315 - 1836262
Alignment:
Q  248 tgattttgcctcaatagttgattcta-cttgaagctaggatttgtagcttttga 300  Q
    |||||||||||| | | ||||||||| |||||||||||||| ||||||||||||    
T  1836315 tgattttgcctctaaaattgattctaacttgaagctaggatgtgtagcttttga 1836262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 7533750 - 7533787
Alignment:
Q  218 ctgacatgtttagttgctttccagtagaattgattttg 255  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  7533750 ctgacatgtttggttgctttcaagtagaattgattttg 7533787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 35495201 - 35495278
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagcta 283  Q
    |||||||||| | |||||||||| ||| || |  | ||||||| |||||||||| | | |||||||||||||||||||    
T  35495201 gtagaattgattttgacatgttttgtttctctaaattagaattaattttgcctctagaattgattctacttgaagcta 35495278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 4950459 - 4950503
Alignment:
Q  240 agtagaattgattttgcctcaatagttgattctacttgaagctag 284  Q
    |||||||||||||||||||||| | ||||||  ||||||||||||    
T  4950459 agtagaattgattttgcctcaaaaattgattagacttgaagctag 4950503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 11791839 - 11791783
Alignment:
Q  245 aattgattttgcctcaatagttgattctac-ttgaagctaggatttgtagcttttga 300  Q
    |||||| |||||||| |||  ||||||||| || |||||||||||||||||||||||    
T  11791839 aattgaatttgcctccataactgattctaccttcaagctaggatttgtagcttttga 11791783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 298
Target Start/End: Original strand, 26668493 - 26668585
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagctttt 298  Q
    |||||||||| ||| ||||||||  ||  | || ||||||||||||| |||||| ||| |||||||||||| || |||  |||||||| ||||    
T  26668493 gtagaattgattctaacatgtttgattcttgtcgagtagaattgattctgcctccataattgattctacttaaaactacaatttgtagttttt 26668585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 32994327 - 32994283
Alignment:
Q  265 ttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    ||||||||||||||||||| ||||| |||||||||| | ||||||    
T  32994327 ttgattctacttgaagctatgatttctagcttttgagtctagaat 32994283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 206 - 309
Target Start/End: Original strand, 35065004 - 35065107
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    |||||||||| | |||||| ||| ||||||||| |||||||||||||||||||||||| |||||| ||||||||||||| ||||||  ||||||||| ||    
T  35065004 gtagaattgattatgacatttttggttgctttcgagtagaattgattttgcctcaataattgattttacttgaagctagtatttgtgacttttgattcta 35065103  T
Q  306 gaat 309  Q
    ||||    
T  35065104 gaat 35065107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 32818500 - 32818411
Alignment:
Q  220 gacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    ||||| ||| ||| ||||| |||||||||||||||||||| | | ||||||||| |||||||||| ||||||||||||||||| ||||||    
T  32818500 gacatatttggtttctttcgagtagaattgattttgcctccagaattgattctatttgaagctagaatttgtagcttttgattctagaat 32818411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 237 - 307
Target Start/End: Complemental strand, 50061741 - 50061671
Alignment:
Q  237 tccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattataga 307  Q
    ||||||||||||||||||||||| | | |||||||||||||||| |||||||||||| |||||||| ||||    
T  50061741 tccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtagtttttgattctaga 50061671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 210 - 302
Target Start/End: Complemental strand, 54705531 - 54705438
Alignment:
Q  210 aattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattct-acttgaagctaggatttgtagcttttgatt 302  Q
    |||||| || ||||||||| ||||||  | |||| ||||||||||||||||||| ||||| || ||||||||||||| ||||||||||||||||    
T  54705531 aattgattcagacatgtttggttgctcacaagtataattgattttgcctcaataattgatactaacttgaagctagggtttgtagcttttgatt 54705438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 297
Target Start/End: Original strand, 25318989 - 25319080
Alignment:
Q  207 tagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattct-acttgaagctaggatttgtagcttt 297  Q
    ||||||||| | |||||||||| |||||| || |||||||||||||||| ||| | | |||||||| |||||||| ||||||||||||||||    
T  25318989 tagaattgattttgacatgtttggttgctctcgagtagaattgattttgtctccagaattgattctaacttgaaggtaggatttgtagcttt 25319080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 26617443 - 26617508
Alignment:
Q  240 agtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    |||||||||||||||||||| | |  ||||||||||||||||||| || |||||||||||||||||    
T  26617443 agtagaattgattttgcctccaaaaatgattctacttgaagctagaatctgtagcttttgattata 26617508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 302
Target Start/End: Complemental strand, 46344964 - 46344880
Alignment:
Q  217 tctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgatt 302  Q
    |||||||||||| ||||||||| |||| ||||||||||||||| ||| || ||||||||||||| ||| ||||  |||||||||||    
T  46344964 tctgacatgtttggttgctttcaagtataattgattttgcctccataatt-attctacttgaagttagaatttccagcttttgatt 46344880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 221 - 302
Target Start/End: Complemental strand, 49138891 - 49138811
Alignment:
Q  221 acatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgatt 302  Q
    |||||||| |||| |||| |||| ||||||||||||||| | | || ||||||||||||||||||||||||| |||||||||    
T  49138891 acatgtttggttgttttcaagtaaaattgattttgcctccaaactt-attctacttgaagctaggatttgtaacttttgatt 49138811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 309
Target Start/End: Original strand, 9134564 - 9134654
Alignment:
Q  219 tgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    ||||||||||||||| | || ||| ||||||||||| | || | | ||||| |||||||||||||  ||||||||||||||||| ||||||    
T  9134564 tgacatgtttagttgttatcgagtggaattgattttacttccagaattgatcctacttgaagctaaaatttgtagcttttgattttagaat 9134654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 300
Target Start/End: Complemental strand, 33560702 - 33560620
Alignment:
Q  219 tgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattct-acttgaagctaggatttgtagcttttga 300  Q
    |||||||||| |||||| || |||||||||||||||||||| | | |||||||| ||   |||||||||||||||||||||||    
T  33560702 tgacatgtttggttgctctcgagtagaattgattttgcctctagaattgattctaaccgaaagctaggatttgtagcttttga 33560620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 11271641 - 11271587
Alignment:
Q  247 ttgattttgcctcaatagttgattcta-cttgaagctaggatttgtagcttttga 300  Q
    ||||||||||||| | | ||||||||| |||||||||||||||||||||||||||    
T  11271641 ttgattttgcctccagaattgattctaacttgaagctaggatttgtagcttttga 11271587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 298
Target Start/End: Original strand, 43868092 - 43868169
Alignment:
Q  221 acatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagctttt 298  Q
    |||||||| ||||||||| ||||||||| |||||| ||| | | ||||||||| |||||  || ||||||||||||||    
T  43868092 acatgtttggttgctttctagtagaattaattttgtctccacaattgattctatttgaaattaagatttgtagctttt 43868169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 8604707 - 8604663
Alignment:
Q  265 ttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    ||||||||||||||||||| ||||||||||||| |||| ||||||    
T  8604707 ttgattctacttgaagctaagatttgtagctttcgattctagaat 8604663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 309
Target Start/End: Original strand, 9064187 - 9064275
Alignment:
Q  221 acatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    |||||||| |||| | || | ||||||| | |||||| | ||| ||||||||||||||| |||| |||||||| |||||||| ||||||    
T  9064187 acatgtttggttgttgtcgaatagaattaaatttgccaccataattgattctacttgaaactagaatttgtagtttttgattctagaat 9064275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 30357512 - 30357552
Alignment:
Q  265 ttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  30357512 ttgattctacttgaagctgtgatttgtagcttttgattata 30357552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 55187047 - 55187003
Alignment:
Q  265 ttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    |||||||||||||||| ||||||||||| ||||| ||||||||||    
T  55187047 ttgattctacttgaagttaggatttgtaacttttaattatagaat 55187003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 298
Target Start/End: Complemental strand, 29779161 - 29779106
Alignment:
Q  243 agaattgattttgcctcaatagttgattctacttgaagctaggatttgtagctttt 298  Q
    |||||||||||||| |  | | |||||||||||||||||||| |||||||||||||    
T  29779161 agaattgattttgcttgtagaattgattctacttgaagctagaatttgtagctttt 29779106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 309
Target Start/End: Complemental strand, 39733777 - 39733679
Alignment:
Q  210 aattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    |||||| |||||||| ||| |||| | || |||| |||| ||| |||||| ||| ||||||||||||| || ||  ||||||||||||||||| ||||||    
T  39733777 aattgattctgacatattttgttgttatcaagtataatttattctgcctccataattgattctacttg-agttacaatttgtagcttttgattgtagaat 39733679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 302
Target Start/End: Original strand, 8330071 - 8330153
Alignment:
Q  221 acatgtttagttgctttccagtagaattgattttgcctcaatagttgattcta-cttgaagctaggatttgtagcttttgatt 302  Q
    |||||||| |||||| || |||| |||||||| |||||| ||| | ||||||| ||||||||||| | ||| |||||||||||    
T  8330071 acatgtttggttgctctcaagtaaaattgattctgcctccataatggattctaacttgaagctagaaattggagcttttgatt 8330153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 292
Target Start/End: Complemental strand, 49138979 - 49138894
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgta 292  Q
    |||||||||| |||||||||||| |||| |||| |||| |||||||| |||||  | || |  |||||||||||| |||||||||||    
T  49138979 gtagaattgattctgacatgtttggttgttttcaagtaaaattgattgtgcctgca-agcttgttctacttgaagataggatttgta 49138894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 302
Target Start/End: Original strand, 22250166 - 22250263
Alignment:
Q  205 agtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgatt 302  Q
    ||||||||| | |||||||||||| |||| | || | ||||||||||||||| || |   ||| ||||||||||||| || | ||| |||||||||||    
T  22250166 agtagaattcattctgacatgtttggttgttctcaattagaattgattttgcatctaggattggttctacttgaagcaagaaattgaagcttttgatt 22250263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 41370118 - 41370053
Alignment:
Q  242 tagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattataga 307  Q
    |||||||||||||  ||| | |||||||||||||||||| |||||||| ||| |||| ||| ||||    
T  41370118 tagaattgattttaactctagagttgattctacttgaagttaggatttatagttttttattctaga 41370053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 298
Target Start/End: Original strand, 16551898 - 16551990
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagctttt 298  Q
    |||||||||| |||||||||| | |||||| || | ||||  ||||| |||||| |   | |||||| |||||||||||||||||||| ||||    
T  16551898 gtagaattgattctgacatgtatggttgctgtcgaatagagctgattctgcctctaggatggattctccttgaagctaggatttgtagttttt 16551990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 30357647 - 30357687
Alignment:
Q  265 ttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    ||||||||| ||||||||| ||| |||||||||||||||||    
T  30357647 ttgattctaattgaagctatgatctgtagcttttgattata 30357687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 284
Target Start/End: Complemental strand, 48045847 - 48045767
Alignment:
Q  204 aagtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctag 284  Q
    |||||||||||| || ||||||||| ||||||||| |||| || | |||||||| | | | || |||| ||||||||||||    
T  48045847 aagtagaattgattcggacatgtttggttgctttcaagtaaaactaattttgccaccagaatttattcgacttgaagctag 48045767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 53713669 - 53713609
Alignment:
Q  242 tagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgatt 302  Q
    ||||||| ||||||  |||| | || ||| |||||||||||| ||||||||||||||||||    
T  53713669 tagaattaattttgtttcaagaattaattttacttgaagctacgatttgtagcttttgatt 53713609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 206 - 298
Target Start/End: Complemental strand, 5724774 - 5724682
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagctttt 298  Q
    |||||||||| |||||||||||| | |||||||  ||||||||||||||||||| | | |||||||||||||||||||||||||||| |||||    
T  5724774 gtagaattgattctgacatgtttggatgctttcaggtagaattgattttgcctccaaaattgattctacttgaagctaggatttgtaactttt 5724682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 206 - 309
Target Start/End: Complemental strand, 765530 - 765427
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    |||||||||| |||||| ||||| ||||||||  ||||||| || ||||| ||||| | ||||||||||||||||||| |||||||||||||||||| ||    
T  765530 gtagaattgattctgacgtgtttggttgcttttaagtagaactggttttggctcaagaattgattctacttgaagctatgatttgtagcttttgattcta 765431  T
Q  306 gaat 309  Q
    ||||    
T  765430 gaat 765427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 206 - 309
Target Start/End: Original strand, 4910849 - 4910952
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    |||||||||| |||||||||||| ||||   || | ||||||||||| |||||||| | ||||||||||||||||||| |||||||||||||||||| ||    
T  4910849 gtagaattgattctgacatgtttggttgtcgtcaattagaattgattctgcctcaaaaattgattctacttgaagctatgatttgtagcttttgattcta 4910948  T
Q  306 gaat 309  Q
    ||||    
T  4910949 gaat 4910952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 302
Target Start/End: Original strand, 26280546 - 26280642
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgatt 302  Q
    |||||||||| | ||||||||||  ||| |||   ||||||||||||||||||||| | ||||||| |||||||||||| |||||||| ||||||||    
T  26280546 gtagaattgattttgacatgtttgattgttttttggtagaattgattttgcctcaagaattgattccacttgaagctagaatttgtagtttttgatt 26280642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 240 - 309
Target Start/End: Original strand, 16540082 - 16540151
Alignment:
Q  240 agtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    |||| |||||||| || ||| | | |||||||||||||||||||||||||||||||||||||||| ||||    
T  16540082 agtaaaattgattctgtctccaaaattgattctacttgaagctaggatttgtagcttttgattattgaat 16540151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 307
Target Start/End: Complemental strand, 6654232 - 6654133
Alignment:
Q  208 agaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattataga 307  Q
    |||||||| | || ||||||| |||||| |  ||||||||||||||| |||  | | || ||||||||||||||||||||||||||||||| ||| ||||    
T  6654232 agaattgattatgtcatgtttggttgctattgagtagaattgatttttccttcagaattaattctacttgaagctaggatttgtagcttttaattctaga 6654133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 309
Target Start/End: Complemental strand, 7952809 - 7952750
Alignment:
Q  250 attttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    |||||||||| | | || |||||||||||||| |||||||||||||||||||| ||||||    
T  7952809 attttgcctccaaaatttattctacttgaagcgaggatttgtagcttttgattctagaat 7952750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 30927009 - 30927087
Alignment:
Q  231 ttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    |||||||| | || ||| |||||||| || | | |||||| |||||||||||| |||| ||||||||||||||||||||    
T  30927009 ttgctttcgattataatagattttgcttccagaattgattatacttgaagctaagattcgtagcttttgattatagaat 30927087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 298
Target Start/End: Complemental strand, 25195504 - 25195418
Alignment:
Q  210 aattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagctttt 298  Q
    |||||| |||||||||||| |||||| || |||| |||||||| ||||||   | |||||||||||||||||  |||||||||| ||||    
T  25195504 aattgattctgacatgtttggttgctatcgagtataattgattctgcctccggaattgattctacttgaagc--ggatttgtagttttt 25195418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 309
Target Start/End: Complemental strand, 1485291 - 1485187
Alignment:
Q  206 gtagaattgactct-gacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattat 304  Q
    |||||||||| ||| |||||||||  ||||| |  ||||||||| |||||||||  | | ||||||||||||||| |||| | ||| ||||||||||| |    
T  1485291 gtagaattgattcttgacatgtttgtttgctcttgagtagaattaattttgcctttagaattgattctacttgaatctagaaattggagcttttgattct 1485192  T
Q  305 agaat 309  Q
    |||||    
T  1485191 agaat 1485187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 285
Target Start/End: Complemental strand, 2008631 - 2008567
Alignment:
Q  221 acatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctagg 285  Q
    |||||||| ||||||||| |||||||||||||||||||| | | || ||||||| ||| ||||||    
T  2008631 acatgtttggttgctttctagtagaattgattttgcctccagaattaattctacgtgatgctagg 2008567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 6896035 - 6895991
Alignment:
Q  265 ttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||||    
T  6896035 ttgattctacctgaagttaggatttgtagcttttgattctagaat 6895991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 285
Target Start/End: Complemental strand, 2008482 - 2008403
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctagg 285  Q
    |||||||||  ||||||||||||  ||| |||| ||||||||| |||||| ||| ||| |  ||||||||||||||||||    
T  2008482 gtagaattgtttctgacatgtttgattgttttcgagtagaattcattttgtctccataatcaattctacttgaagctagg 2008403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 35098294 - 35098228
Alignment:
Q  230 gttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagctt 296  Q
    ||||||||| | |||||||||||||||||  | | ||||||||| |||||||||| | |||||||||    
T  35098294 gttgctttcaactagaattgattttgcctacaaaattgattctaattgaagctagaaattgtagctt 35098228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 308
Target Start/End: Complemental strand, 35098589 - 35098500
Alignment:
Q  219 tgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaa 308  Q
    |||||||||| ||| ||||  ||||||||||||||||| || |   |||||||||||| |  || |||||| |||||||||||| |||||    
T  35098589 tgacatgtttggttacttttgagtagaattgattttgcttccaggattgattctacttaatactgggatttttagcttttgattctagaa 35098500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 852512 - 852576
Alignment:
Q  245 aattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    |||| |||||||||| ||| ||||||| |||||||||||| | |||||| || ||||| ||||||    
T  852512 aatttattttgcctccataattgattcaacttgaagctagaaattgtaggttctgattctagaat 852576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 206 - 309
Target Start/End: Original strand, 31767 - 31870
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    |||||||||| |||||||||||| |||| | || |||| |||||||| |||||| | | |||||| |||||||||||||||||||||||||||||||||     
T  31767 gtagaattgattctgacatgtttggttgttgtcgagtaaaattgattctgcctccaaaattgattatacttgaagctaggatttgtagcttttgattatt 31866  T
Q  306 gaat 309  Q
    ||||    
T  31867 gaat 31870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 206 - 302
Target Start/End: Complemental strand, 28084032 - 28083936
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgatt 302  Q
    |||||||||| |||||||| ||| |||| |||| |||||||||||||||| ||   || |||||||||||||||||||| |||||||||||||||||    
T  28084032 gtagaattgattctgacatatttggttgttttcgagtagaattgattttgtcttcgtaattgattctacttgaagctagaatttgtagcttttgatt 28083936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 206 - 309
Target Start/End: Complemental strand, 31362345 - 31362246
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    ||||||| |||||| |||||||| |||||||||  ||||||||||||||||||| ||| |||||||    ||||| ||| ||||||||||||||||| ||    
T  31362345 gtagaatcgactctaacatgtttggttgctttcatgtagaattgattttgcctccataattgattc----tgaagttagaatttgtagcttttgattcta 31362250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 302
Target Start/End: Original strand, 6021749 - 6021841
Alignment:
Q  210 aattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgatt 302  Q
    |||||| | ||||| ||||  ||| |||| |||||||||||||||||||| | | | ||||||||||||||||||||| ||||||||||||||    
T  6021749 aattgattttgacaagtttgattgatttcaagtagaattgattttgcctctagaatcgattctacttgaagctaggatatgtagcttttgatt 6021841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 1514296 - 1514383
Alignment:
Q  217 tctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    |||||||||||| |||||| || |||| || ||||| || ||| | | || ||||||||||||||||||||||||||||||| ||||||    
T  1514296 tctgacatgtttggttgctgtc-agtaaaactgattctgtctccaaaatttattctacttgaagctaggatttgtagctttttattata 1514383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 290
Target Start/End: Complemental strand, 47322050 - 47321966
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttg 290  Q
    |||||||||| | |||||||||| |||| | || ||||||||||||| ||| || ||| |||||| ||||||||||||| |||||    
T  47322050 gtagaattgattttgacatgttttgttgttgtcgagtagaattgattctgcttctataattgattatacttgaagctagaatttg 47321966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 302
Target Start/End: Original strand, 11049252 - 11049287
Alignment:
Q  267 gattctacttgaagctaggatttgtagcttttgatt 302  Q
    ||||||||||||||||||||||||||||||||||||    
T  11049252 gattctacttgaagctaggatttgtagcttttgatt 11049287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 303
Target Start/End: Complemental strand, 32088713 - 32088620
Alignment:
Q  210 aattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattct-acttgaagctaggatttgtagcttttgatta 303  Q
    |||||| | |||||||||| |||||| || ||||||||||||||| |||  | | |||||||| |||||||||||||||||  ||||||||||||    
T  32088713 aattgattttgacatgtttggttgctctcaagtagaattgatttt-cctacaaaattgattctaacttgaagctaggatttcgagcttttgatta 32088620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 272 - 309
Target Start/End: Original strand, 7524120 - 7524157
Alignment:
Q  272 tacttgaagctaggatttgtagcttttgattatagaat 309  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  7524120 tacttgaagttaggatttgtagcttttgattatagaat 7524157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 28287417 - 28287377
Alignment:
Q  269 ttctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  28287417 ttctacttgaagcaaggatttgtagcttttgattttagaat 28287377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 51500915 - 51500875
Alignment:
Q  269 ttctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  51500915 ttctacttgaacctaggatttgtagcttttgattctagaat 51500875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 3016140 - 3016206
Alignment:
Q  242 tagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    ||||||||||||||| | | || |||||||||||||||  ||| ||||||||||||||||| ||||||    
T  3016140 tagaattgattttgcttta-taattgattctacttgaacttagaatttgtagcttttgattctagaat 3016206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 30557505 - 30557548
Alignment:
Q  266 tgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    |||||||| ||||||||||||||||||| |||||||| ||||||    
T  30557505 tgattctagttgaagctaggatttgtagtttttgattctagaat 30557548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 300
Target Start/End: Original strand, 12655198 - 12655280
Alignment:
Q  219 tgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattct-acttgaagctaggatttgtagcttttga 300  Q
    |||||||||||||||||||  |||||| | || |||||||| | | || ||||| |||||||||||| ||||||||| |||||    
T  12655198 tgacatgtttagttgctttggagtagattcgactttgcctctagaattaattctaacttgaagctagaatttgtagcatttga 12655280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 36780199 - 36780157
Alignment:
Q  268 attctacttgaagctaggattt-gtagcttttgattatagaat 309  Q
    ||||||||||||| |||||||| ||||||||||||||||||||    
T  36780199 attctacttgaagttaggattttgtagcttttgattatagaat 36780157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 300
Target Start/End: Complemental strand, 18325500 - 18325439
Alignment:
Q  240 agtagaattgattttgcctcaatagttgattcta-cttgaagctaggatttgtagcttttga 300  Q
    |||||||||||||||||||| | |||| | |||| |||||||||||||||||  ||||||||    
T  18325500 agtagaattgattttgcctccaaagttaactctaacttgaagctaggatttgatgcttttga 18325439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 30220320 - 30220267
Alignment:
Q  240 agtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtag 293  Q
    ||||||||||||||||| |  ||| |||||||||||||||||||  ||||||||    
T  30220320 agtagaattgattttgcttgtataattgattctacttgaagctataatttgtag 30220267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 309
Target Start/End: Complemental strand, 48549110 - 48549053
Alignment:
Q  252 tttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    |||||||| | | |||||||||||||||||||| | ||||||||| ||||| ||||||    
T  48549110 tttgcctccaaaattgattctacttgaagctagaaattgtagcttctgattctagaat 48549053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 309
Target Start/End: Original strand, 30995998 - 30996086
Alignment:
Q  221 acatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    ||||||||  ||| |||| ||||| ||||||||| | | || | |||||||||||||||| || |||| |||| |||| ||||||||||    
T  30995998 acatgtttgtttggtttcaagtagtattgatttttctttaagaattgattctacttgaagttatgattagtagttttttattatagaat 30996086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 206 - 309
Target Start/End: Complemental strand, 18851226 - 18851123
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    ||||||||||||||||| ||||| |||||| || | ||||||||||  |  | | ||| ||||||||||||||||||| |||||||||||||||||||||    
T  18851226 gtagaattgactctgacgtgtttggttgctatcaattagaattgatcctatccctataattgattctacttgaagctatgatttgtagcttttgattata 18851127  T
Q  306 gaat 309  Q
    ||||    
T  18851126 gaat 18851123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 248 - 309
Target Start/End: Original strand, 9818717 - 9818778
Alignment:
Q  248 tgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    |||||||||||| ||| ||||||||||||||||||| |||||||||||||||||| ||||||    
T  9818717 tgattttgcctccataattgattctacttgaagctatgatttgtagcttttgattctagaat 9818778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 302
Target Start/End: Complemental strand, 6951448 - 6951353
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgatt 302  Q
    |||||||||| |||||||| ||||||| ||||| ||||||||  | || | ||| ||| |||||||||||||||| |||||||||||||||||||||    
T  6951448 gtagaattgattctgacatatttagttactttcgagtagaatc-agttcgtctctataattgattctacttgaagttaggatttgtagcttttgatt 6951353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 27374433 - 27374349
Alignment:
Q  208 agaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgta 292  Q
    |||||||  |||||||||||| |||| |||| ||||||||| ||||||||| || | |||||||||||||||| |||||||||||    
T  27374433 agaattgtttctgacatgtttggttgttttcaagtagaattaattttgccttaagaattgattctacttgaagttaggatttgta 27374349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 299
Target Start/End: Original strand, 38845761 - 38845819
Alignment:
Q  242 tagaattgattttgcctcaatagttgattct-acttgaagctaggatttgtagcttttg 299  Q
    |||||||||||||||||| |||||||||||| |||||||||||| ||| ||||||||||    
T  38845761 tagaattgattttgcctctatagttgattctgacttgaagctagaattcgtagcttttg 38845819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 302
Target Start/End: Complemental strand, 34250495 - 34250399
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgatt 302  Q
    |||||||||  | |||||||||| ||| || |  ||||||||||||| |||||| | | |||||||||||||| ||||| | |||||||||||||||    
T  34250495 gtagaattgtttttgacatgtttggtttctctagagtagaattgattatgcctctagaattgattctacttgatgctagaaattgtagcttttgatt 34250399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 309
Target Start/End: Original strand, 14299271 - 14299374
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    |||||||||| |||| ||| ||| |||| |||| | || |||||||||||| |  | | |||||||||||||||| |||||||||||| |||| ||| ||    
T  14299271 gtagaattgattctggcatatttggttgttttcgaataaaattgattttgcttttaaaattgattctacttgaagttaggatttgtagttttttattcta 14299370  T
Q  306 gaat 309  Q
    ||||    
T  14299371 gaat 14299374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 309
Target Start/End: Complemental strand, 22226380 - 22226277
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    |||||||||| |||||||||||| |||| | || | || |||||||||||  |   |  |||||||||||||||| ||| ||||||||||||||||| ||    
T  22226380 gtagaattgattctgacatgtttggttgttgtcgactaaaattgattttgttttgttgattgattctacttgaagatagtatttgtagcttttgatttta 22226281  T
Q  306 gaat 309  Q
    ||||    
T  22226280 gaat 22226277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 22572489 - 22572445
Alignment:
Q  265 ttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    |||||| | ||||||||| ||||||||||||||||||||||||||    
T  22572489 ttgattgttcttgaagctgggatttgtagcttttgattatagaat 22572445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 31906239 - 31906299
Alignment:
Q  245 aattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    ||||| |||| |||| ||| |||||| |||||||||||| |||||||| ||||||||||||    
T  31906239 aattgtttttacctctataattgattttacttgaagctatgatttgtaacttttgattata 31906299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 38845443 - 38845487
Alignment:
Q  265 ttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    ||||||||||||||||||| ||||||||| |||||||| ||||||    
T  38845443 ttgattctacttgaagctaagatttgtagtttttgattctagaat 38845487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 305
Target Start/End: Original strand, 11648027 - 11648122
Alignment:
Q  210 aattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    |||||| | ||||||||||  ||||| || ||||||||| ||| ||| |  | | ||||||||||||||||||| ||||||||  |||||||||||    
T  11648027 aattgattttgacatgtttgattgctgtcgagtagaatttattatgcatttaaaattgattctacttgaagctaagatttgtacattttgattata 11648122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 309
Target Start/End: Complemental strand, 11132926 - 11132826
Alignment:
Q  210 aattgactctgacatgtttagttgctttccagtagaattgattttgcc-tcaatagttgattcta-cttgaagctaggatttgtagcttttgattataga 307  Q
    |||||||| |||||||||| |||||| || ||||||||| |||||| | |||| | ||||||||| ||||||||||  | ||||||||||| ||| ||||    
T  11132926 aattgactttgacatgtttggttgctctctagtagaatttattttggcgtcaaaa-ttgattctaacttgaagctacaaattgtagctttttattgtaga 11132828  T
Q  308 at 309  Q
    ||    
T  11132827 at 11132826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 309
Target Start/End: Original strand, 36639912 - 36639981
Alignment:
Q  240 agtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    |||||||||||||||||||| | | | |||||||||||||||| | | ||||||||| | ||| ||||||    
T  36639912 agtagaattgattttgcctccaaaatagattctacttgaagctggaaattgtagcttctaattctagaat 36639981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 3970506 - 3970450
Alignment:
Q  245 aattgattttgcctcaatagttgattctact-tgaagctaggatttgtagcttttga 300  Q
    ||||||||||||||| | | ||||||||| | ||||||||||| |||||||||||||    
T  3970506 aattgattttgcctccagaattgattctaatctgaagctaggaattgtagcttttga 3970450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 1441525 - 1441424
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    |||||||||| | |||||||||| ||| ||||  |||||||||||||||| ||| ||| | || |||||||||| |||||||||||||||||||||| ||    
T  1441525 gtagaattgagtttgacatgtttggtttcttttgagtagaattgattttgtctctataatcgactctacttgaaactaggatttgtagcttttgattcta 1441426  T
Q  306 ga 307  Q
    ||    
T  1441425 ga 1441424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 308
Target Start/End: Complemental strand, 44958750 - 44958648
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    |||||||||| |||||||||||| |||||| ||  |  |||||||||||||||| | ||||||||||||| || ||||| | ||| ||||||||||| ||    
T  44958750 gtagaattgattctgacatgtttggttgctctcagggggaattgattttgcctccagagttgattctactcgatgctagaaattggagcttttgattcta 44958651  T
Q  306 gaa 308  Q
    |||    
T  44958650 gaa 44958648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 302
Target Start/End: Complemental strand, 32523484 - 32523388
Alignment:
Q  207 tagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctactt-gaagctaggatttgtagcttttgatt 302  Q
    ||||||||| || ||| ||||| ||||||||| |||| ||| ||||||||||| ||| ||  |||||||| |||| |||||||||||||||||||||    
T  32523484 tagaattgattcagacttgtttggttgctttcgagtaaaatagattttgcctccataattatttctacttggaagttaggatttgtagcttttgatt 32523388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 302
Target Start/End: Complemental strand, 7717431 - 7717369
Alignment:
Q  240 agtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgatt 302  Q
    |||||||||||||||||||| | | |||||||||||||||||||| | ||||||||| |||||    
T  7717431 agtagaattgattttgcctccagaattgattctacttgaagctagaaattgtagcttctgatt 7717369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 309
Target Start/End: Original strand, 35058336 - 35058405
Alignment:
Q  240 agtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    |||||||||||||||||||||| | ||||||||||||| |||||| | ||  ||||||||||| ||||||    
T  35058336 agtagaattgattttgcctcaagaattgattctacttggagctagaaattcgagcttttgattctagaat 35058405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 35058067 - 35058111
Alignment:
Q  265 ttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||    
T  35058067 ttgattctacatgaagctaggatttgtagcttttaattatagaat 35058111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 299
Target Start/End: Complemental strand, 41115493 - 41115413
Alignment:
Q  219 tgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttg 299  Q
    |||||||||| | || |||  ||||||||||||||||| |  | | |||||||||||||||||||| ||||||||||||||    
T  41115493 tgacatgtttggatgttttaaagtagaattgattttgcttgtagaattgattctacttgaagctagaatttgtagcttttg 41115413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 309
Target Start/End: Original strand, 36302139 - 36302227
Alignment:
Q  219 tgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    |||||||||||||||  ||| |||||||||||||||||||  | ||||||||||| ||||||||||   ||| || |||||||| ||||||    
T  36302139 tgacatgtttagttg--ttcaagtagaattgattttgccttcagagttgattctatttgaagctagagattggagattttgattttagaat 36302227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 309
Target Start/End: Original strand, 54596763 - 54596862
Alignment:
Q  210 aattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    |||||| | |||||||||| |||| |||| ||||||||||||| |||||| | |  ||||| || |||||| ||| ||||||| ||||| ||| ||||||    
T  54596763 aattgattatgacatgtttggttgttttcaagtagaattgattctgcctccaaaaatgattttatttgaagttagaatttgtaacttttaattttagaat 54596862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 299
Target Start/End: Original strand, 23290269 - 23290327
Alignment:
Q  242 tagaattgattttgcctcaatagttgattct-acttgaagctaggatttgtagcttttg 299  Q
    ||||||||||| || ||| |||||||||||| ||||||| ||| |||||||||||||||    
T  23290269 tagaattgattatgtctctatagttgattctaacttgaaactatgatttgtagcttttg 23290327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 48410953 - 48410903
Alignment:
Q  209 gaattgactctgacatgtttagttgctttccagtagaattgattttgcctc 259  Q
    ||||||| ||||| ||||||  |||||||| ||||||||||||||||||||    
T  48410953 gaattgattctgagatgtttgattgctttcgagtagaattgattttgcctc 48410903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 309
Target Start/End: Original strand, 5406881 - 5406950
Alignment:
Q  240 agtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    |||| ||||||||||||||| | | | ||||||||| |||||||| | | ||||||| ||||||||||||    
T  5406881 agtataattgattttgcctctagaatggattctactcgaagctagaaatggtagcttctgattatagaat 5406950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 309
Target Start/End: Complemental strand, 35264556 - 35264452
Alignment:
Q  205 agtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattat 304  Q
    |||| |||||| ||| |||||||| |||||| || |  |||||||||| |||||| | |  |||||||||||||| |||| | ||  ||||||||||| |    
T  35264556 agtaaaattgattctcacatgtttggttgctctcgaagagaattgattctgcctccaaatatgattctacttgaaactagaaattagagcttttgattct 35264457  T
Q  305 agaat 309  Q
    |||||    
T  35264456 agaat 35264452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 40147935 - 40147891
Alignment:
Q  265 ttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    |||||||||||| ||||||| ||||| ||||||||||| ||||||    
T  40147935 ttgattctacttcaagctagaatttggagcttttgattctagaat 40147891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 41596275 - 41596204
Alignment:
Q  210 aattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagct 282  Q
    |||||| |||||||||||| ||||||||| |  |||||| |||||||||| | |||| |||||||||| ||||    
T  41596275 aattgattctgacatgtttggttgctttcga-aagaattaattttgcctctagagtttattctacttgtagct 41596204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 302
Target Start/End: Original strand, 44771635 - 44771731
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgatt 302  Q
    |||||| ||| |||||||||||  | |||| ||  ||||||||| |||||||||   | |||||||||| | || |||| |||||||||||||||||    
T  44771635 gtagaactgattctgacatgttgggctgctatcaggtagaattggttttgcctccggaattgattctacctaaatctagaatttgtagcttttgatt 44771731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 309
Target Start/End: Complemental strand, 41386955 - 41386856
Alignment:
Q  210 aattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    |||||| ||||||||||||  |||||||| |||| |||||||||  |||  | | |||||||||||||||||||||||||||||||||| ||| ||||||    
T  41386955 aattgattctgacatgtttgattgctttcgagtataattgatttcaccttcagaattgattctacttgaagctaggatttgtagcttttaattctagaat 41386856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 309
Target Start/End: Original strand, 27571803 - 27571906
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    |||||||||||||  ||||||||  ||||| || |||| |||||||||| |||||| | |||||||||||||||| ||| | ||| ||||||||||| ||    
T  27571803 gtagaattgactcctacatgtttgattgctctcgagtataattgattttacctcaagaattgattctacttgaagttagaaattggagcttttgattcta 27571902  T
Q  306 gaat 309  Q
    ||||    
T  27571903 gaat 27571906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 40422754 - 40422828
Alignment:
Q  227 ttagttgctttccagtagaattgattttgcctcaatagttgattct-acttgaagctaggatttgtagcttttga 300  Q
    ||||||||| || |||||||||||||||||||||| | |||||||| |||||||| |||||||||| ||||||||    
T  40422754 ttagttgctctcaagtagaattgattttgcctcaagaattgattctaacttgaagttaggatttgtggcttttga 40422828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 309
Target Start/End: Original strand, 45004960 - 45005064
Alignment:
Q  205 agtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattat 304  Q
    |||| |||||| | |||||||||| |||||| || | |||||||||||||||||  | | |||||||||||||||||||  | ||| ||  |||||||||    
T  45004960 agtataattgattttgacatgtttggttgctctcgaatagaattgattttgccttcagaattgattctacttgaagctaaaaattggaggctttgattat 45005059  T
Q  305 agaat 309  Q
    |||||    
T  45005060 agaat 45005064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 305
Target Start/End: Complemental strand, 5489986 - 5489891
Alignment:
Q  210 aattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    |||||| ||| |||||||| ||||||    ||||||||| |||||||||| | | |||||||||||||| ||||| | ||| ||||||||||||||    
T  5489986 aattgattcttacatgtttggttgctcctgagtagaattaattttgcctccaaaattgattctacttgatgctagaaattggagcttttgattata 5489891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 309
Target Start/End: Original strand, 40491519 - 40491622
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    |||||||||| ||| ||||| || ||||||||| |  | ||||||||||||||  | | |||| ||||||||||| || | |||||||||||||||| ||    
T  40491519 gtagaattgattctaacatggttggttgctttcgaagataattgattttgccttcagaattgactctacttgaagttaagttttgtagcttttgattcta 40491618  T
Q  306 gaat 309  Q
    ||||    
T  40491619 gaat 40491622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 297
Target Start/End: Original strand, 36270938 - 36271012
Alignment:
Q  223 atgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttt 297  Q
    |||||| ||| || || |||||||||||||||||||| | | || ||||||||||||| | ||||||||||||||    
T  36270938 atgtttggtttctctctagtagaattgattttgcctctagaatttattctacttgaagttgggatttgtagcttt 36271012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 17111857 - 17111894
Alignment:
Q  265 ttgattctacttgaagctaggatttgtagcttttgatt 302  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  17111857 ttgattctacttgaagctatgatttgtagcttttgatt 17111894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 302
Target Start/End: Complemental strand, 28725196 - 28725100
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctc-aatagttgattctacttgaagctaggatttgtagcttttgatt 302  Q
    |||||||||| |  ||||||||| |||| ||||   |||||||||||  ||||| |||| |||||| ||||||||||||| |||||||||||||||||    
T  28725196 gtagaattgatttagacatgtttggttgttttcgtttagaattgattcagcctccaata-ttgattatacttgaagctagaatttgtagcttttgatt 28725100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 12306675 - 12306727
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcct 258  Q
    |||||||||| | |||||||||| |||||| || |||||||||||||||||||    
T  12306675 gtagaattgattttgacatgtttggttgctctcaagtagaattgattttgcct 12306727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 15903635 - 15903580
Alignment:
Q  245 aattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttga 300  Q
    ||||||||||||||| | | |||||| ||||||||| | |||||||||||||||||    
T  15903635 aattgattttgcctccaaaattgattatacttgaagttgggatttgtagcttttga 15903580  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 252
Target Start/End: Original strand, 17111819 - 17111862
Alignment:
Q  209 gaattgactctgacatgtttagttgctttccagtagaattgatt 252  Q
    ||||||| |||||||||||| ||||||||| |||||||||||||    
T  17111819 gaattgattctgacatgtttggttgctttcgagtagaattgatt 17111862  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 23441355 - 23441307
Alignment:
Q  225 gtttagttgctttccagtagaattgattttgcctcaatagttgattcta 273  Q
    ||||||||| |||| |||| ||||||||||||||| ||| |||||||||    
T  23441355 gtttagttgttttcaagtacaattgattttgcctccataattgattcta 23441307  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 26984565 - 26984533
Alignment:
Q  265 ttgattctacttgaagctaggatttgtagcttt 297  Q
    ||||||||||||||||||| |||||||||||||    
T  26984565 ttgattctacttgaagctaagatttgtagcttt 26984533  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 30182381 - 30182337
Alignment:
Q  265 ttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    |||||||||||||||||||  | ||||||||||||||| ||||||    
T  30182381 ttgattctacttgaagctaaaaattgtagcttttgattctagaat 30182337  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 205 - 298
Target Start/End: Complemental strand, 2002840 - 2002747
Alignment:
Q  205 agtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagctttt 298  Q
    |||||||||||   ||||||  || ||||||||| |||||||||||||||||||| | |  |||||||||||||||||||||||||||| ||||    
T  2002840 agtagaattgatgttgacatacttggttgctttctagtagaattgattttgcctccagacctgattctacttgaagctaggatttgtagttttt 2002747  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 309
Target Start/End: Original strand, 10644545 - 10644647
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    |||||||||||||||||||||||   || |||| ||||||||||||| |||||| | | || ||||||||||||| || ||||||||| |||| ||||||    
T  10644545 gtagaattgactctgacatgtttgtctg-tttcgagtagaattgattctgcctccaaaatttattctacttgaagttaagatttgtagtttttcattata 10644643  T
Q  306 gaat 309  Q
    ||||    
T  10644644 gaat 10644647  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 305
Target Start/End: Original strand, 16518720 - 16518819
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    |||||||||| ||||| |||||| |||||||| ||   |||||| |||||| || | | ||||||||||| |||| ||||||||||||||||||||||||    
T  16518720 gtagaattgattctgatatgtttggttgcttttcaaatgaattggttttgcttccagaattgattctactagaagataggatttgtagcttttgattata 16518819  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 206 - 309
Target Start/End: Original strand, 42740918 - 42741021
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattata 305  Q
    |||||||||| | |||||||||  || |||||| | ||| | ||| ||| |||| ||| ||||||||||||||||||| |||||||||||||||||| ||    
T  42740918 gtagaattgattttgacatgttccgtagctttcgaataggactgaattttcctccataattgattctacttgaagctaagatttgtagcttttgattcta 42741017  T
Q  306 gaat 309  Q
    ||||    
T  42741018 gaat 42741021  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 680408 - 680344
Alignment:
Q  219 tgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagcta 283  Q
    |||||||||||||||||||| | ||||| |||||||||||| | | |||||||||||||||||||    
T  680408 tgacatgtttagttgctttcgaatagaactgattttgcctccagaattgattctacttgaagcta 680344  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 302
Target Start/End: Original strand, 30503150 - 30503246
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgatt 302  Q
    |||||||||| ||| |||||||   ||| |||| || |||| |||||||||||| | | ||||||||||||||||| |||||| |||||||||||||    
T  30503150 gtagaattgattctaacatgttcgattgatttcaagaagaaatgattttgcctccaaaattgattctacttgaagccaggattcgtagcttttgatt 30503246  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 43501125 - 43501169
Alignment:
Q  265 ttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||    
T  43501125 ttgattctacttgaaactaggatttgtagcttttgattttagaat 43501169  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 299
Target Start/End: Original strand, 11510893 - 11510988
Alignment:
Q  205 agtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattcta-cttgaagctaggatttgtagcttttg 299  Q
    ||||||||||  | ||| |||||| | || |||| |||||||||||||||||||| ||| ||||||||| ||||||||||| ||||| || |||||    
T  11510893 agtagaattggttttgatatgtttggatgttttcgagtagaattgattttgcctccatatttgattctatcttgaagctagaatttggagtttttg 11510988  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 31453358 - 31453420
Alignment:
Q  240 agtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgatt 302  Q
    ||||||||| |||||||||| ||| |||||||||||||||||||  ||||||  |||||||||    
T  31453358 agtagaatttattttgcctctataattgattctacttgaagctaaaatttgttccttttgatt 31453420  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 43501084 - 43501130
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgatt 252  Q
    |||||||||| |||||||||||| ||||||||| |||||||||||||    
T  43501084 gtagaattgattctgacatgtttggttgctttcaagtagaattgatt 43501130  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 7630361 - 7630410
Alignment:
Q  210 aattgactctgacatgtttagttgctttccagtagaattgattttgcctc 259  Q
    |||||| | |||||||||| ||||||||| ||||||||||||||||||||    
T  7630361 aattgattttgacatgtttggttgctttcaagtagaattgattttgcctc 7630410  T

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Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 309
Target Start/End: Original strand, 22535973 - 22536042
Alignment:
Q  240 agtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    |||||||||||||||||||  | | |||||||||||||||  ||| ||||| ||||||||||| ||||||    
T  22535973 agtagaattgattttgcctttagaattgattctacttgaatttagaatttgaagcttttgattttagaat 22536042  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 302
Target Start/End: Complemental strand, 10619085 - 10618989
Alignment:
Q  206 gtagaattgactctgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgatt 302  Q
    |||||||||| | | ||| |||| ||||||||||| | |||||||||||||||  | | ||||||||| |||||||||| | ||  |||||||||||    
T  10619085 gtagaattgagtataacaagtttggttgctttccacttgaattgattttgcctttagaattgattctagttgaagctagaaattagagcttttgatt 10618989  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 299
Target Start/End: Complemental strand, 21234610 - 21234576
Alignment:
Q  265 ttgattctacttgaagctaggatttgtagcttttg 299  Q
    |||||||||||||||||||| ||||||||||||||    
T  21234610 ttgattctacttgaagctagaatttgtagcttttg 21234576  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 44810372 - 44810410
Alignment:
Q  263 agttgattcta-cttgaagctaggatttgtagcttttga 300  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  44810372 agttgattctaacttgaagctaggatttgtagcttttga 44810410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 32777924 - 32777985
Alignment:
Q  219 tgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaag 280  Q
    |||||||||| |||| ||||  ||||||||||||||||||| ||| || |||| ||||||||    
T  32777924 tgacatgtttggttgttttcgtgtagaattgattttgcctccataatttattcaacttgaag 32777985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 309
Target Start/End: Complemental strand, 33019266 - 33019197
Alignment:
Q  240 agtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaat 309  Q
    |||| |||||||| |||||| | | |||||| || |||||||||| |||||||||||||| || ||||||    
T  33019266 agtataattgattctgcctctagaattgattatatttgaagctagaatttgtagcttttggttttagaat 33019197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 300
Target Start/End: Original strand, 37561681 - 37561742
Alignment:
Q  240 agtagaattgattttgcctcaatagttgattct-acttgaagctaggatttgtagcttttga 300  Q
    |||||| ||||||||||||| ||| |||||||| ||||||| ||| |||||||| |||||||    
T  37561681 agtagatttgattttgcctctataattgattctaacttgaaactacgatttgtaccttttga 37561742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 42982544 - 42982581
Alignment:
Q  265 ttgattctacttgaagctaggatttgtagcttttgatt 302  Q
    |||||||||||||||||||| | |||||||||||||||    
T  42982544 ttgattctacttgaagctagaaattgtagcttttgatt 42982581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 300
Target Start/End: Complemental strand, 23724 - 23643
Alignment:
Q  219 tgacatgtttagttgctttccagtagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttga 300  Q
    |||||||||| |||||  || | | |||||||||||| ||| |||  | ||||||  |||||||||||||||||||||||||    
T  23724 tgacatgtttggttgccctcgaatggaattgattttgtctccataaataattctaactgaagctaggatttgtagcttttga 23643  T

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Target: scaffold0361 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 14223 - 14179
Alignment:
Q  240 agtagaattgattttgcctcaatagttgattctacttgaagctag 284  Q
    |||||||||||||||| | ||| | ||||||||||||||||||||    
T  14223 agtagaattgattttgtcacaagaattgattctacttgaagctag 14179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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