View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: J5-61 (Length: 623)
Name: J5-61
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-61 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] scaffold0048 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 110 - 623
Target Start/End: Complemental strand, 11632309 - 11631796
Alignment:
| Q |
110 |
aattgcttagagtgaaattacataggctagtgtttatatatagataaacagttgacnnnnnnnttagtttaaatctgccaaaataactctgtaataaaac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11632309 |
aattgcttagagtgaaattacataggctagtgtttatatatagataaacagttgacaaaaaaattagtttaaatctgccaaaataactctgtaataaaac |
11632210 |
T |
|
| Q |
210 |
tattaatgatagaattaactctaataaaaaacttattaacttgctaggaaaaatcagttgacttctaactctatagctgtgagttaatctcctaacaact |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11632209 |
tattaatgatagaattaactctaataaaaaacttattaacttgctaggaaaaatcagttgacttctaactctatagctgtgagttaatctcctaacaact |
11632110 |
T |
|
| Q |
310 |
tgacttgatctctttcacatcttgtctttgagatttgtaagactcaatgtattagtcttcgcaagctgcgcgccatccatttgggtcttgtaagactcga |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11632109 |
tgacttgatctctttcacatcttgtctttgagatttgtaagactcaatgtattagtcttcgcaagctgcgcgccatccatttgggtcttgtaagactcga |
11632010 |
T |
|
| Q |
410 |
gatattactctccgcaagttgcgtgcggaggatatcggaattacgccaaaaataaaacaaaacatgttcaaaaatatactttcagacatattccatctgc |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11632009 |
gatattactctccgcaagttgcgtgcggaggatatcggaattacgccaaaaataaaacaaaacatgttcaaaaatatactttcagacatattccatctgc |
11631910 |
T |
|
| Q |
510 |
aagcctacttgaaaagaagagtaattttgtcnnnnnnnnnnnnnngagaattgaggtatttatgaacactggggttgggggtgggaaacaaagcttccat |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11631909 |
aagcctacttgaaaagaagagtaattttgtcaaaaaaagaaaaaagagaattgaggtatttatgaacattggggttgggggtgggaaacaaagcttccat |
11631810 |
T |
|
| Q |
610 |
aggataatgggaac |
623 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11631809 |
aggataatgggaac |
11631796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 11631800 - 11631688
Alignment:
| Q |
1 |
ggaacgacattgggggttggatcaatcaatcaattttctaataatagcttttcaatttcgataaaattaaaaaatatagttagtttccgaatttaatttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11631800 |
ggaacgacattgggggttggatcaatcaatcaattttctaataatagcttttcaatttcgataaaattaaaaaatatagttagtttccgaatttaatttc |
11631701 |
T |
|
| Q |
101 |
ttgtttgagaatt |
113 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11631700 |
ttgtttgagaatt |
11631688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 3e-71; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 124 - 306
Target Start/End: Complemental strand, 3814202 - 3814018
Alignment:
| Q |
124 |
aaattacataggctagtgtttatatatagataaaca--gttgacnnnnnnnttagtttaaatctgccaaaataactctgtaataaaactattaatgatag |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3814202 |
aaattacataggctagtgtttatatatagataaacacagttgacaaaaaaactagtttaaatctgccaaaataactctgtaataaaactattaatgacag |
3814103 |
T |
|
| Q |
222 |
aattaactctaataaaaaacttattaacttgctaggaaaaatcagttgacttctaactctatagctgtgagttaatctcctaaca |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3814102 |
aattaactctaataaaaaacttattaacttgctagtaaaaaccagttgacttctaactctatagctgtgagttaatctcctaaca |
3814018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 124 - 307
Target Start/End: Complemental strand, 3811370 - 3811185
Alignment:
| Q |
124 |
aaattacataggctagtgtttatatatagataaaca--gttgacnnnnnnnttagtttaaatctgccaaaataactctgtaataaaactattaatgatag |
221 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
3811370 |
aaattacataggctagtggttatatatagaaaaacacagttgacaaaaaaactagtttaaatctgccaaaataactctgttataaaactattaatgacag |
3811271 |
T |
|
| Q |
222 |
aattaactctaataaaaaacttattaacttgctaggaaaaatcagttgacttctaactctatagctgtgagttaatctcctaacaa |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3811270 |
aattaactctaataaaaaacttattaacttgctagtaaaaaccagttgacttctaactctatagctgtgagttaatctcctaacaa |
3811185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 220 - 306
Target Start/End: Complemental strand, 32703609 - 32703524
Alignment:
| Q |
220 |
agaattaactctaataaaaaacttattaacttgctaggaaaaatcagttgacttctaactctatagctgtgagttaatctcctaaca |
306 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32703609 |
agaattaactctaataaaaaact-attaacttgctagtaaaaaccagttgacttctaactgtatagctgtgagttaatctcctaaca |
32703524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 32703689 - 32703640
Alignment:
| Q |
109 |
gaattgcttagagtgaaattacataggctagtgtttatatatagataaaca |
159 |
Q |
| |
|
||||||||| || |||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
32703689 |
gaattgcttggaatgaaattacataggctggtgtttatata-agataaaca |
32703640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 401 - 441
Target Start/End: Original strand, 34946489 - 34946529
Alignment:
| Q |
401 |
aagactcgagatattactctccgcaagttgcgtgcggagga |
441 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| |||||||| |
|
|
| T |
34946489 |
aagactcgagaaattagtctccgcaagttgcgagcggagga |
34946529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 6e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 188 - 307
Target Start/End: Complemental strand, 43141701 - 43141582
Alignment:
| Q |
188 |
caaaataactctgtaataaaactattaatgatagaattaactctaataaaaaacttattaacttgctaggaaaaatcagttgacttctaactctatagct |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
43141701 |
caaaataactctgtaataaaactattaatgacagaattaactctaataaaaaacttattaacttgctagtaaaaaccagttgacttctaactctatagct |
43141602 |
T |
|
| Q |
288 |
gtgagttaatctcctaacaa |
307 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
43141601 |
gtgagttaatctcctaacaa |
43141582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 43141758 - 43141709
Alignment:
| Q |
110 |
aattgcttagagtgaaattacataggctagtgtttatatatagataaaca |
159 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43141758 |
aattgcttagagttaaattacataggctagtgtttatatatagataaaca |
43141709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 188 - 306
Target Start/End: Complemental strand, 39398233 - 39398115
Alignment:
| Q |
188 |
caaaataactctgtaataaaactattaatgatagaattaactctaataaaaaacttattaacttgctaggaaaaatcagttgacttctaactctatagct |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
39398233 |
caaaataactctgtaataaaactattaatgacagaattaactctaataaaaaacttattaacttgctagtaaaaaccagttgacttctaactctatagct |
39398134 |
T |
|
| Q |
288 |
gtgagttaatctcctaaca |
306 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
39398133 |
gtgagttaatctcctaaca |
39398115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 188 - 306
Target Start/End: Complemental strand, 39400121 - 39400003
Alignment:
| Q |
188 |
caaaataactctgtaataaaactattaatgatagaattaactctaataaaaaacttattaacttgctaggaaaaatcagttgacttctaactctatagct |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
39400121 |
caaaataactctgtaataaaactattaatgacagaattaactctaataaaaaacttattaacttgctagtaaaaaccagttgacttctaactctatagct |
39400022 |
T |
|
| Q |
288 |
gtgagttaatctcctaaca |
306 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
39400021 |
gtgagttaatctcctaaca |
39400003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 39398290 - 39398241
Alignment:
| Q |
110 |
aattgcttagagtgaaattacataggctagtgtttatatatagataaaca |
159 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39398290 |
aattgcttagagttaaattacataggctagtgtttatatatagataaaca |
39398241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 39400178 - 39400129
Alignment:
| Q |
110 |
aattgcttagagtgaaattacataggctagtgtttatatatagataaaca |
159 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| | ||||||| |
|
|
| T |
39400178 |
aattgcttagagttaaattacataggctagtgtttatatacatataaaca |
39400129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 307
Target Start/End: Original strand, 23430245 - 23430357
Alignment:
| Q |
193 |
taactctgtaataaaactattaatgatagaattaactctaataaaaaacttattaacttgctaggaaaaa-tcagttgacttctaactctatagctgtga |
291 |
Q |
| |
|
||||||||||||||||||||||||| | ||| |||| |||||||| ||||||||||||| ||||| | ||||||| ||||| | ||||| ||||| |
|
|
| T |
23430245 |
taactctgtaataaaactattaatggca-aatctactcgaataaaaac--tattaacttgctaataaaaactaagttgacctctaattttataggtgtga |
23430341 |
T |
|
| Q |
292 |
gttaatctcctaacaa |
307 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
23430342 |
gttaatctcctaacaa |
23430357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 188 - 306
Target Start/End: Complemental strand, 41406813 - 41406695
Alignment:
| Q |
188 |
caaaataactctgtaataaaactattaatgatagaattaactctaataaaaaacttattaacttgctaggaaaaatcagttgacttctaactctatagct |
287 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
41406813 |
caaaataattctgtaataaaattattaatgacagaattaactctaataaaaaacttattaacttgctagtaaaaaccagttgacttctaactctatagct |
41406714 |
T |
|
| Q |
288 |
gtgagttaatctcctaaca |
306 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
41406713 |
gtgagttaatctcctaaca |
41406695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 188 - 306
Target Start/End: Complemental strand, 41408303 - 41408185
Alignment:
| Q |
188 |
caaaataactctgtaataaaactattaatgatagaattaactctaataaaaaacttattaacttgctaggaaaaatcagttgacttctaactctatagct |
287 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
41408303 |
caaaataactccgtagtaaaactattaatgacagaattaactctaataaaaaacttattaacttgctagtaaaaaccagttgacttctaactctatagct |
41408204 |
T |
|
| Q |
288 |
gtgagttaatctcctaaca |
306 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
41408203 |
gtgagttaatctcctaaca |
41408185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 41406870 - 41406821
Alignment:
| Q |
110 |
aattgcttagagtgaaattacataggctagtgtttatatatagataaaca |
159 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41406870 |
aattgcttagagttaaattacataggctagtgtttatatatagataaaca |
41406821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 41408360 - 41408311
Alignment:
| Q |
110 |
aattgcttagagtgaaattacataggctagtgtttatatatagataaaca |
159 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41408360 |
aattgcttagagttaaattacataggctagtgtttatatatagataaaca |
41408311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 386 - 443
Target Start/End: Original strand, 25739182 - 25739239
Alignment:
| Q |
386 |
ccatttgggtcttgtaagactcgagatattactctccgcaagttgcgtgcggaggata |
443 |
Q |
| |
|
||||||||||| |||||||||| | |||| |||||||||||||||||||||||||| |
|
|
| T |
25739182 |
ccatttgggtcccataagactcgataaattagtctccgcaagttgcgtgcggaggata |
25739239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 98; Significance: 6e-48; HSPs: 2)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 173 - 306
Target Start/End: Complemental strand, 79617 - 79485
Alignment:
| Q |
173 |
ttagtttaaatctgccaaaataactctgtaataaaactattaatgatagaattaactctaataaaaaacttattaacttgctaggaaaaatcagttgact |
272 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
79617 |
ttagttcaaatctgtcaaaataactctgtaataaaactattaatgacataattaactctaataaaaaac-tattaacttgctagtaaaaatcagttgact |
79519 |
T |
|
| Q |
273 |
tctaactctatagctgtgagttaatctcctaaca |
306 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| |
|
|
| T |
79518 |
tctaactgtatagttgtgagttaatctcctaaca |
79485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 80973 - 80886
Alignment:
| Q |
174 |
tagtttaaatctgccaaaataactctgtaataaaactattaatgatagaattaactctaataaaaaacttattaacttgctaggaaaaa |
262 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
80973 |
tagttcaaatctgccaaaataactctgtaataaaactattaatgacataattaactctaataaaaaac-tattaacttgctagtaaaaa |
80886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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