View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-63 (Length: 409)
Name: J5-63
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-63 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 34119002 - 34119362
Alignment:
| Q |
1 |
attccaattccaaataggggccatatagcgcaatttagattagcatgggcataaactatctttttagtattggtttccatttttctgaaatatcatgatt |
100 |
Q |
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| T |
34119002 |
attccaattccaaataggggccatatagcgcaatttagattagcatgggcataaactatctttttagtattggtttccatttttctgaaatatcatgatt |
34119101 |
T |
|
| Q |
101 |
tgnnnnnnnatttacttaggattaggattatatattagtataaaaaatgttattactctgtcttttcattttactccttcnnnnnnntctaaatctagaa |
200 |
Q |
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| T |
34119102 |
tgtttttttatttacttaggattaggattatatattagtataaaaaatgttattactctgtcttttcattttactccttcaaaaaaatctaaatctagaa |
34119201 |
T |
|
| Q |
201 |
tttaacatgtgttatatgcaaagtggagcagcaccactctgtatgcagcaagcgatattcctattggtgtagatattagaaatgcattttcagaggatta |
300 |
Q |
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| T |
34119202 |
tttaacatgtgttatatgcaaagtggagcagcaccactctgtatgcagcaagcgatattcctattggtgtagatattagaaatgcattttcagaggatta |
34119301 |
T |
|
| Q |
301 |
gccaccttgactctagtttttgctggtaaataagcaacacattcaactgtacattcaattg |
361 |
Q |
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| T |
34119302 |
gccaccttgactctagtttttgctggtaaataagcaacacattcaactgtacattcaattg |
34119362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 243 - 331
Target Start/End: Complemental strand, 35914509 - 35914421
Alignment:
| Q |
243 |
atgcagcaagcgatattcctattggtgtagatattagaaatgcattttcagaggattagccaccttgactctagtttttgctggtaaat |
331 |
Q |
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| T |
35914509 |
atgctgcaagcaatattcctataggtgtagctattagaaatgcattttcagaggattactcaccttgactctagttcttgccggtaaat |
35914421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 356 - 409
Target Start/End: Original strand, 34118953 - 34119006
Alignment:
| Q |
356 |
caattgcaagcttctacgtgtcctttgcgtttgtggccatttagacacaattcc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34118953 |
caattgcaagcttctacgtgtcctttgcgtttgtggccatttagacacaattcc |
34119006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 35914974 - 35914930
Alignment:
| Q |
122 |
ttaggattatatattagtataaaaaatgttattactctgtctttt |
166 |
Q |
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|||||||||||||||||||||||||| |||| ||||| ||||||| |
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| T |
35914974 |
ttaggattatatattagtataaaaaaggttagtactccgtctttt |
35914930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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