View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-64 (Length: 456)
Name: J5-64
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-64 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 59 - 456
Target Start/End: Complemental strand, 43055445 - 43055048
Alignment:
| Q |
59 |
tcaattgtagtgggttctatttagtgttttttcttcctaatattnnnnnnnnnnnnnnnnnntcaagtgttaacaacaaacatatatgttaggtctagcg |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43055445 |
tcaattgtagtgggttctatttagtgttttttcttcctaatattaaaattaaaaaacaaaaatcaagtgttaacaacaaacatatatgttaggtctagcg |
43055346 |
T |
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| Q |
159 |
taagaggctagactctcacaatttgataaactaagatttaaatatcaatgaagagaggtgtccatatttaatgtcggacaatatctcgaatatgattaca |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43055345 |
taagaggctagactctcacaatttgataaactaagatttaaatatcaatgaagagaggtgtccatatttaatgtcggacaatatctcgaatatgattaca |
43055246 |
T |
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| Q |
259 |
tttagtcgagggaatttatgcaagaaaaaggtaatgaagtgttgactgcaaacgtttaaagttgtatctactggagaatattcgagagaaaatgtttgat |
358 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43055245 |
tttagtcgagggaatttatgcaagaaaaaagtaatgaagtgttgactgcaaacgtttaaagttgtatctactggagaatattcgagagaaaatgtttgat |
43055146 |
T |
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| Q |
359 |
tgaccaagtagagcacggcaaaatgtgaattgtgtttaagaaacttgtgcttcaagcaaaaacttgttaatgactgacatagccgtgaagggttagac |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43055145 |
tgaccaagtagagcacggcaaaatgtgaattgtgtttaagaaacttgtgcttcaagcaaaaacttgttaatgactgacatagccgtgaagggttagac |
43055048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 43055052 - 43054988
Alignment:
| Q |
1 |
tagactgtgtgactaagttaataattccacaagttttcccaaactttctcccaacatttcaattg |
65 |
Q |
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| T |
43055052 |
tagactgtgtgactaagttaataattccacaagttttcccaaactttctcccaacatttcaattg |
43054988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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