View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-7-1 (Length: 341)
Name: J5-7-1
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-7-1 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 186 - 341
Target Start/End: Complemental strand, 47277484 - 47277329
Alignment:
| Q |
186 |
ctaccttattgactgtgttgtttgtacncaannangcttaattgtttatacatgatcccttcgagaataattgtttgcagtttataccacgataagcact |
285 |
Q |
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| T |
47277484 |
ctaccttattgactgtgttgtttgtactagattatgtttaattgtttatacatgatcccttcgagaataattgtttgcagtttataccacgataagcact |
47277385 |
T |
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| Q |
286 |
ttgactacactccaacttttttggccaagtccaaaaccatttatttgcaacttact |
341 |
Q |
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| T |
47277384 |
ttgactacactccaacttttttggccaagtccaaaaccatttatttgcaacttact |
47277329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 47277333 - 47277206
Alignment:
| Q |
1 |
ttacttaccacnaataattagtatatgtattgttgttgttagtcaagcaaatttggtgtttacccaactaattgttcctatatgtgattagttgtttgtt |
100 |
Q |
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| T |
47277333 |
ttacttaccacaaataattagtatatgtattgttgttgttagtcaagcaaatttggtgtttagacaactaattgttcctatatgtgattagttgtttgtt |
47277234 |
T |
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| Q |
101 |
tgtttgtcatttgctaaactcaaaagac |
128 |
Q |
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| T |
47277233 |
tgtttgtcatttgctaaactcaaaagac |
47277206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 186 - 339
Target Start/End: Complemental strand, 47265093 - 47264941
Alignment:
| Q |
186 |
ctaccttattgactgtgttgtttgtacncaannangcttaattgtttatacatgatcccttcgagaataattgtttgcagtttataccacga---taagc |
282 |
Q |
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| T |
47265093 |
ctaccttcttgactgtgttgtttgtactagattatgttt--ttgtttatacatgatcccttcaagaataactgtttgcagtttataccaccacgttaaac |
47264996 |
T |
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| Q |
283 |
actttgactacactccaacttttttggccaagtccaaaaccatttatttgcaactta |
339 |
Q |
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| T |
47264995 |
acttggactatactccaacttttttggccaagtccaaaaccatt--tttgcaactta |
47264941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 47264939 - 47264872
Alignment:
| Q |
5 |
ttaccacnaataattagtatatgtattgttgttgttagtcaagcaaatttggtgtttacccaactaattgtt |
76 |
Q |
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| T |
47264939 |
ttaccacaaataattagtatatgtattgttgtt----gtcatgcaaatttggtgtttagccaactaattgtt |
47264872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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