View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-7-14 (Length: 242)
Name: J5-7-14
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-7-14 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 73 - 242
Target Start/End: Complemental strand, 38619429 - 38619260
Alignment:
| Q |
73 |
attaataactacntatttgcatgtgattaacccgatgtgacatggatgtaaacgaatgcccatgtatatcattactgttacaataataagcacttattga |
172 |
Q |
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| T |
38619429 |
attaataactacatatttgcatgtgattaacccgatgtgacatggatgtaaacgaatgcccatgtatatcattactgttacaataataagcacttattga |
38619330 |
T |
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| Q |
173 |
ttttgccttacaaagaagctaaaatgtaacaagctgacgaagcggaagataatacacttttgcaaacaaa |
242 |
Q |
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| T |
38619329 |
ttttgccttacaaagaagctaaaatgtaacaagctgacgaagtggaagataatacacttttgcaaacaaa |
38619260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 38619264 - 38619187
Alignment:
| Q |
1 |
acaaaatggttaagatttttccactttataatatcattcagcagtaccaaagataagaatgggaaataagacattaat |
78 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38619264 |
acaaaatggttaagatttttccactttataatatcattcagcagtaccaaagataagaatgggaaataagacattaat |
38619187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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