View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: J5-7-20 (Length: 363)
Name: J5-7-20
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-7-20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 46 - 168
Target Start/End: Original strand, 26255855 - 26255977
Alignment:
| Q |
46 |
gagcaattagaacttttcttgcatcaatgtatatttgctaattatggggattcaatcgactggctgccaatttctgaaattactatttggtctacagtta |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26255855 |
gagcaattagaacttttcttgcatcaatgtatatttgctaattatggggattcaatcgactggctgccaatttctgaaattactatttggtctacagtta |
26255954 |
T |
|
| Q |
146 |
tattcttttctcacgatattaat |
168 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
26255955 |
tattcttttctcacgatattaat |
26255977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 255 - 345
Target Start/End: Original strand, 26255705 - 26255795
Alignment:
| Q |
255 |
gataaaatagtactactagtagttttcttaatcaaaagtactcatttttcttgcgagtaaaattttcaacaggttaatttcatgggggtgt |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26255705 |
gataaaatagtactactagtagttttcttaatcaaaagtactcatttttcttgcgagtaaaattttcaacaggttaatttcatgggggtgt |
26255795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 198
Target Start/End: Original strand, 26255613 - 26255648
Alignment:
| Q |
163 |
attaattatgcgtattttgaaatgcatatccatggc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
26255613 |
attaattatgcgtattttgaaatgcatatccatggc |
26255648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 26255809 - 26255838
Alignment:
| Q |
1 |
gctcctccgtttcaatcgactaattagaac |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
26255809 |
gctcctccgtttcaatcgactaattagaac |
26255838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 13249 times since January 2019
Visitors: 8270