View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-7-32 (Length: 354)
Name: J5-7-32
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-7-32 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 27 - 354
Target Start/End: Original strand, 22778652 - 22778979
Alignment:
| Q |
27 |
attaattaaggtacaataactagacatgacatcgacatgaacatttacaaaccgatcataattnnnnnnnntataatagtgacggaatgcaaaaacacac |
126 |
Q |
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| T |
22778652 |
attaattaaggtacaataactagacatgacatcgacatgaacatttacaaaccgatcataattaaaaaaaatataatagtgacggaatgcaaaaacacac |
22778751 |
T |
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| Q |
127 |
acacatgcatacctatatattggtatcagacaaaaatgtgttacctctataacatctccaacattgataactagagcatctgatgttggtttaaccggta |
226 |
Q |
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| T |
22778752 |
acacatgcatacctatatattggtatcagacaaaaatgtgttacctctataacatctccaacattgataactagagcatctgatattggtttaaccggta |
22778851 |
T |
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| Q |
227 |
cccaatttcctttgtttctgatttctaatccaagcacatcatcatcttgaataagtaaggtaatggtggttgtgtcagagtgtggactcaaacccaatac |
326 |
Q |
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| T |
22778852 |
cccaatttcctttgtttctgatttctaatccaagcacatcatcatcttgaataagtaaggtaatggtggttgtgtcagagtgtggactcaaacccaatac |
22778951 |
T |
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| Q |
327 |
ttgctcagggttgtcgcaaggagggtaa |
354 |
Q |
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| T |
22778952 |
ttgctcagggttgttgcaaggagggtaa |
22778979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 167 - 354
Target Start/End: Original strand, 22775637 - 22775824
Alignment:
| Q |
167 |
ttacctctataacatctccaacattgataactagagcatctgatgttggtttaaccggtacccaatttcctttgtttctgatttctaatccaagcacatc |
266 |
Q |
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| T |
22775637 |
ttacctctattacatctccgacattgacaactagagcatctgatattggagtaacgggtacccaatttcctttatgtcgaatttctaatccaggcacatc |
22775736 |
T |
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| Q |
267 |
atcatcttgaataagtaaggtaatggtggttgtgtcagagtgtggactcaaacccaatacttgctcagggttgtcgcaaggagggtaa |
354 |
Q |
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| T |
22775737 |
atcatcttgcataagtaaagtaatggtgcttgagtcggagtgtggactcaaacccaacacttgctcaggtgtgtcgcaaggagggtaa |
22775824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 168 - 335
Target Start/End: Original strand, 22766121 - 22766288
Alignment:
| Q |
168 |
tacctctataacatctccaacattgataactagagcatctgatgttggtttaaccggtacccaatttcctttgtttctgatttctaatccaagcacatca |
267 |
Q |
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| T |
22766121 |
tacctctataacatctccaacattgacaacaagagcatctgatattggaataactggaacccaatttcctttgtttcgaatttctaacccaggcacatca |
22766220 |
T |
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| Q |
268 |
tcatcttgaataagtaaggtaatggtggttgtgtcagagtgtggactcaaacccaatacttgctcagg |
335 |
Q |
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| T |
22766221 |
tcatcttgcataagaatggtaatggtgcctgtgtcagagtgtgagctcaaacccaatacttgatcagg |
22766288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 167 - 354
Target Start/End: Complemental strand, 16084250 - 16084063
Alignment:
| Q |
167 |
ttacctctataacatctccaacattgataactagagcatctgatgttggtttaaccggtacccaatttcctttgtttctgatttctaatccaagcacatc |
266 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||| | | || | |||||||||||||||||||||| || |||||||| ||| | ||||| |
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| T |
16084250 |
ttacctctattgcatctccaacattgacaactagagcatctgctatgggagttaccggtacccaatttcctttgtgtcgaatttctaacccaggaacatc |
16084151 |
T |
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| Q |
267 |
atcatcttgaataagtaaggtaatggtggttgtgtcagagtgtggactcaaacccaatacttgctcagggttgtcgcaaggagggtaa |
354 |
Q |
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| T |
16084150 |
atcatcttgcaaaagtaaggtaatggtggttgagtcacagtgtggtctcaaacctaatactttctcaggcatgctgcaaggagggtaa |
16084063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 223 - 354
Target Start/End: Original strand, 22783295 - 22783426
Alignment:
| Q |
223 |
ggtacccaatttcctttgtttctgatttctaatccaagcacatcatcatcttgaataagtaaggtaatggtggttgtgtcagagtgtggactcaaaccca |
322 |
Q |
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|||||||||||||||||||||| |||||||| ||| ||||||||||||||| || || |||||||||||| ||||||||| || | ||||| ||| | |
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| T |
22783295 |
ggtacccaatttcctttgtttcgaatttctaacccagacacatcatcatcttgcatgagcaaggtaatggtgcctgtgtcagaatgcgaactcataccta |
22783394 |
T |
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| Q |
323 |
atacttgctcagggttgtcgcaaggagggtaa |
354 |
Q |
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| T |
22783395 |
atacttgctcaggtgtgttgcaaggagggtaa |
22783426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 22778975 - 22779007
Alignment:
| Q |
1 |
ggtaatagttcacgcgtaaaccttgaattaatt |
33 |
Q |
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| T |
22778975 |
ggtaatagttcacgcgtaaaccttgaattaatt |
22779007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 332
Target Start/End: Complemental strand, 23278182 - 23278018
Alignment:
| Q |
168 |
tacctctataacatctccaacattgataactagagcatctgatgttggtttaaccggtacccaatttcctttgtttctgatttctaatccaagcacatca |
267 |
Q |
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||||||||| |||||||||| ||||| |||| ||||| || | |||| |||| ||||||||||||||||||| || | |||||| ||| |||||| |
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| T |
23278182 |
tacctctattacatctccaagattgaccactaaagcatttggtattggattaattggtacccaatttcctttgtatcgaacttctaacccagttacatca |
23278083 |
T |
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| Q |
268 |
tcatcttgaataagtaaggtaatggtggttgtgtcagagtgtggactcaaacccaatacttgctc |
332 |
Q |
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|| ||||| |||| || |||| ||| ||| |||||||||||| |||| || | ||||||||| |
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| T |
23278082 |
tcgtcttgcataactattgtaactgtgcttgcatcagagtgtggagtcaacccaattacttgctc |
23278018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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