View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-7-35 (Length: 243)
Name: J5-7-35
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-7-35 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 49 - 223
Target Start/End: Original strand, 40771268 - 40771442
Alignment:
| Q |
49 |
attaatatctttatagttaangacatgtcacatgataatattagcatcatacctcacttccttggtatttatgtattgagcacgcnaagtctctgatttt |
148 |
Q |
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| T |
40771268 |
attaatatctttatagttaaggacatgtcacatgataatattagcatcatacctcacttccttggtatttatgtattgagcacgcaaagtttctgatttt |
40771367 |
T |
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| Q |
149 |
cntcttctgtgtcgtttcatctcgtagtccttacaagatgtatctgagttacaatattaaaacacacatatatca |
223 |
Q |
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| T |
40771368 |
cttcttctgtgtcgtttcatctcgtagtccttacaagatgtatctgagttacaatattaaaacacacatatatca |
40771442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 58 - 163
Target Start/End: Original strand, 40777986 - 40778091
Alignment:
| Q |
58 |
tttatagttaangacatgtcacatgataatattagcatcatacctcacttccttggtatttatgtattgagcacgcnaagtctctgattttcntcttctg |
157 |
Q |
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| T |
40777986 |
tttaaagttaatgacatgtcacataatcagattaacatcagacctcacttccttcgtatttatgtattgagcacgcaaagtttctgattttcctcttctg |
40778085 |
T |
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| Q |
158 |
tgtcgt |
163 |
Q |
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|||||| |
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| T |
40778086 |
tgtcgt |
40778091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 40771458 - 40771510
Alignment:
| Q |
1 |
acctcatcacgataacaatcaatcatttaattttacaagaacagttatattaat |
54 |
Q |
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| T |
40771458 |
acctcatcacgataacaatcaatcatttaattttac-agaacagttatattaat |
40771510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 4677151 - 4677086
Alignment:
| Q |
96 |
catacctcacttccttggtatttatgtattgagcacgcnaagtctctgattttcntcttctgtgtc |
161 |
Q |
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| T |
4677151 |
catacctcacttccttagtatttatatactgagcacgcaaagtttctgattttcctcttctgtgtc |
4677086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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