View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-7-5 (Length: 273)
Name: J5-7-5
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-7-5 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 37389739 - 37389909
Alignment:
| Q |
1 |
tgcgtgagtgcgcgcatgcatataaatgtttaggttgtatgaaatttaacacggtaaattttataaccagtttactacaaacggattacttttttatcta |
100 |
Q |
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| T |
37389739 |
tgcgtgagtgcgcgcatgcatataaatgtttaggttgtatgaaatttaacacggtaaattttataaccagtttactacaaacggattacttttttatcta |
37389838 |
T |
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| Q |
101 |
ttcaagtctaagataaagattcatattcttcatacatatctggtggggtgaaaataattaatggcattcaa |
171 |
Q |
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| T |
37389839 |
ttcaagtctaagataaagattcatattcttcatacatatctagtggggtgaaaataattaattgtattcaa |
37389909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 37389624 - 37389743
Alignment:
| Q |
154 |
ataattaatggcattcaatgcatacctagtttaagataaaatttaagataattttagcaaagagcgttatggatccatgctcataaaatacatttttaag |
253 |
Q |
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| T |
37389624 |
ataattaatggcattcaatgcatacctagtttaagataaaatttaagataattttagcaaagagcgttatggatccatgctcataaaatacatttttaaa |
37389723 |
T |
|
| Q |
254 |
ccttatatatgtgggtgcgt |
273 |
Q |
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| T |
37389724 |
ccttatatatgtgggtgcgt |
37389743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 44153579 - 44153505
Alignment:
| Q |
62 |
tataaccagtttactacaaacggattacttttttatctattcaag-tctaagataaagattcatattcttcatac |
135 |
Q |
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||||||| | ||||||||| ||||||| ||||||||||| ||||| | |||||||| ||||||||| ||| |||| |
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| T |
44153579 |
tataacctgattactacaagcggattaattttttatctaatcaagttttaagataaggattcatatacttgatac |
44153505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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