View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-7-57 (Length: 503)
Name: J5-7-57
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-7-57 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 31763233 - 31763532
Alignment:
| Q |
1 |
cattttaggtagtatctgtctggaaaagtgttggtttcaaatttgcaatgtttattttaagtagtagcagaatctgataatacatgtttattaggaatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31763233 |
cattttaggtagtatctgtctggaaaagtgttggtttcaaatttgcaatgtttattttaagtagtagcagaatctgataatacatgtttattaggaatat |
31763332 |
T |
|
| Q |
101 |
gtgaaggattttggtatttgaagtatggacatttttgtaattttaaaggacagagaatctcaagttgtataattttgacnnnnnnnatagaaaataataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31763333 |
gtgaaggattttggtatttgaagtatggacatttttgtaattttaaaggacagagaatctcaagttgtataattttgactttttttatagaaaataataa |
31763432 |
T |
|
| Q |
201 |
agagccatgtgaacttctgacataatggatgttgaaatgacataaaccttgggaagatgttatatgattcagtcacttacatataacaaaatattcccac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31763433 |
agagccatgtgaacttctgacataatggatgttgaaatgacataaaccttgggaagatgttatatgattcagtcacttacatataacaaaatattcccac |
31763532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 399 - 503
Target Start/End: Original strand, 31763133 - 31763237
Alignment:
| Q |
399 |
attaatatttttaaatgcttatgtaactgtttttaaaataaattnnnnnnncagaagtagctcaaacatgttgtaanaactaaaactattattattacta |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31763133 |
attaatatttttaaatgcttatgtaactgtttttaaaataaattaaaaaaacaaaagtagctcaaacatgttgtaataactaaaactattattattacta |
31763232 |
T |
|
| Q |
499 |
cattt |
503 |
Q |
| |
|
||||| |
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| T |
31763233 |
cattt |
31763237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 371 - 406
Target Start/End: Original strand, 31763603 - 31763638
Alignment:
| Q |
371 |
agtgagagatccgttacaactaatctgcattaatat |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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|
| T |
31763603 |
agtgagagatccgttacaactaatctgcattaatat |
31763638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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