View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-7-61 (Length: 336)
Name: J5-7-61
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-7-61 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 40997700 - 40997474
Alignment:
| Q |
1 |
tacctgtcattgtttaatcagtattttgcctttttaacatatgtttctgttaaatgatgatgttgttttgctttatcatgagtggaaaacacgcattttc |
100 |
Q |
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| T |
40997700 |
tacctgtcattgtttaatcagtattttgcctttttaacatatgtttctgttaaatgatgatgttgttttgctttatcatgagtggaaaacacgcattttc |
40997601 |
T |
|
| Q |
101 |
accattgagcagaatttagattatagtacagttctctcagccctgctcacattcaaatccaaagaagccacacctttgtctttagaacataatacaatta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40997600 |
accattgagcagaatttagattatagtacagttctctcaaccctgctcacattcaaatccaaagaagccacacctttgtctttagaacataatacaatta |
40997501 |
T |
|
| Q |
201 |
tcgatatgcatgaaaagtacaattaat |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
40997500 |
tcgatatgcatgaaaagtacaattaat |
40997474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 221 - 336
Target Start/End: Complemental strand, 40997811 - 40997696
Alignment:
| Q |
221 |
aattaatgtaactgaccttggagccaaattattgtgactagaccttaatgcattgttgaaattcatcctctcaattaagaatgctactatttatttgtta |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40997811 |
aattaatgtaactgaccttggagccaaattattgtgactagaccttaatgcattgttgaaattcatcctctcaattaagaatgctactatttatttgtta |
40997712 |
T |
|
| Q |
321 |
ctataattttttacct |
336 |
Q |
| |
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|||||||||||||||| |
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| T |
40997711 |
ctataattttttacct |
40997696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 250 - 311
Target Start/End: Complemental strand, 21898550 - 21898489
Alignment:
| Q |
250 |
tattgtgactagaccttaatgcattgttgaaattcatcctctcaattaagaatgctactatt |
311 |
Q |
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| T |
21898550 |
tattgtgactcgatcttaatgcattgttgaaattcatcgtctcaattatgaatgctactatt |
21898489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 305
Target Start/End: Original strand, 17664892 - 17664966
Alignment:
| Q |
231 |
actgaccttggagccaaattattgtgactagaccttaatgcattgttgaaattcatcctctcaattaagaatgct |
305 |
Q |
| |
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|||||| ||||| | ||||||||||||| || ||||| ||||||||||||| ||||||||||||| ||||||| |
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|
| T |
17664892 |
actgactttggaacaaaattattgtgaccggattttaatacattgttgaaatttatcctctcaattatgaatgct |
17664966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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