View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-7-63 (Length: 573)
Name: J5-7-63
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-7-63 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 78 - 573
Target Start/End: Complemental strand, 43378028 - 43377532
Alignment:
| Q |
78 |
ttattaatgttatatcactcattttcttaattaagtaacaaattaagatagtatatatcactcattttcttaattaacaaattaagataggtatcttcca |
177 |
Q |
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| T |
43378028 |
ttattaatgttatatcactcattttcttaattaagtaacaaattaagatagtatatatcactcattttcttaattaacaaattaagataggtatcttcca |
43377929 |
T |
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| Q |
178 |
aatagattagaaagaaaactataactttaaataaagaccccaacaatttttctccccaattaagagaaagagtatttcagtaaatgtaggatcgcatgta |
277 |
Q |
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| T |
43377928 |
aatagattagaaagaaaactataactttaaataaagaccccaacaatttttctccccaattaagagaaagagtatttcagtaaatgtaggatcgcatgta |
43377829 |
T |
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| Q |
278 |
ttctggaaaccttacatgaatcacttgaactcaacttcatgtaaagaagggctaatataagatactaccatacattgaatgacatggcttcattaaatta |
377 |
Q |
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| T |
43377828 |
ttctggaaaccttacatgaatcacttgaactcaacttcatgtaaagaaaggctaatataagatactaccatacattgaatgacatggcttcattaaatta |
43377729 |
T |
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| Q |
378 |
tgagatgctttatcattggccaaaagtcaaaaccaagactgggaccatttctcgttttttcagcatggggacggaagaagtgtcgtttatacaataatag |
477 |
Q |
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| T |
43377728 |
tgagatgctttatcattggccaaaagtcaaaaccaagactgggaccatttctcgttttttcagcatggggacggaagaagtgtcgtttatacaataatag |
43377629 |
T |
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| Q |
478 |
caacattgttttcctcgatgtctgattaaaagggattaaacatacaccagntcaactttatagtttatactaagtagtc-aatgccagattaacatt |
573 |
Q |
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| T |
43377628 |
caacattgttttcctcgatgtctgattaaaagggattaaacatacaccagttcaactttatagtttatactaagtagtcaaatgccagattaacatt |
43377532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 43377536 - 43377452
Alignment:
| Q |
1 |
acattcacataaatttcctactgattcacagaattggtttcattttcaaaaagttaaattcaatttatattcgccccttattaat |
85 |
Q |
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| T |
43377536 |
acattcacataaatttcctactgattcacagaattggtttcattttcaaaaagttaaattcaatttatattcgccccttattaat |
43377452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 551
Target Start/End: Complemental strand, 43376948 - 43376893
Alignment:
| Q |
496 |
tgtctgattaaaagggattaaacatacaccagntcaactttatagtttatactaag |
551 |
Q |
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| T |
43376948 |
tgtctgattaaaagggattaaacaggcactagttaaactttatagtgtatactaag |
43376893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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