View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-7-7 (Length: 262)
Name: J5-7-7
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-7-7 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 40 - 262
Target Start/End: Original strand, 7753798 - 7754019
Alignment:
| Q |
40 |
aattaatcaaaccttgaacacaactccactctcaagattaaaaatcttaaaatgattatgccggttattccaatttcaaatgcttataatctttcgtggt |
139 |
Q |
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| T |
7753798 |
aattaatcaaaccttgaacacaactt-actctcaagattaaaaatcttaaaatgattatgccggttattccaatttcaaatgcttataatctttcgtggt |
7753896 |
T |
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| Q |
140 |
atagcaagtgtgtgttagaaaatgttcacttctaaagattgtgcgacagttcaaaggtatgtcgtcgtatanttttttgnggttttatgacctcaatctc |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||| |
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| T |
7753897 |
atagcaagtgtgtgttagaaaatgttcacttctaaagattgtgcgacagttcaaaggtatgtcgtcgtatagttttttaaggttttatgacttcaatctc |
7753996 |
T |
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| Q |
240 |
atttgaaaaacacacgatggaac |
262 |
Q |
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||||||||||||||||||||||| |
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| T |
7753997 |
atttgaaaaacacacgatggaac |
7754019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 7754015 - 7754062
Alignment:
| Q |
1 |
ggaacaacaaattttgacattanaaggtaatgaggagataattaatca |
48 |
Q |
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| T |
7754015 |
ggaacaacaaattttgacattaaaaggtaatgaggagataattaatca |
7754062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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