View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-7-9 (Length: 144)
Name: J5-7-9
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-7-9 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 2e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 23 - 144
Target Start/End: Complemental strand, 2115816 - 2115695
Alignment:
| Q |
23 |
attaatcatatattatactatagttctagatcacatatttccttatgaaatgtaatcatgaananaaacaaataccatatattttgttatatgatcatca |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
2115816 |
attaatcatatattatactatagttctagatcacatatttccttatgaaatgtaatcatgaagataaacaaataccatatattttgttatatgatcatca |
2115717 |
T |
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| Q |
123 |
atgattcaatccatcaaataag |
144 |
Q |
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| T |
2115716 |
atgattcaatccatcaaataag |
2115695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 28
Target Start/End: Complemental strand, 2115699 - 2115672
Alignment:
| Q |
1 |
ataaggggggaaatcataagaaattaat |
28 |
Q |
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| T |
2115699 |
ataaggggggaaatcataagaaattaat |
2115672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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