View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-9_18 (Length: 125)
Name: J5-9_18
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-9_18 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 4e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 4e-54
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 57388 - 57264
Alignment:
| Q |
1 |
ttaattattaaacatagttaggcaagaatgaaatgaattgatcttattctcatctaggtgggaatgtggtgcgtacacgtgtnccnaataagtgcggggg |
100 |
Q |
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| T |
57388 |
ttaattattaaacatagttaggcaagaatgaaatgaattgatcttattctcatcttggtgggaatgtggtgcgtacacgtgtaaagaataagtgcggggg |
57289 |
T |
|
| Q |
101 |
gcgtaggtggagtctcataattaat |
125 |
Q |
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||||||||||||||||||||||||| |
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| T |
57288 |
gcgtaggtggagtctcataattaat |
57264 |
T |
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