View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-9_20 (Length: 296)
Name: J5-9_20
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-9_20 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 92 - 296
Target Start/End: Original strand, 4343429 - 4343633
Alignment:
| Q |
92 |
aattaatgtgtccattattaggttgaagttcttctaaccctaatatgatgtgtaaatgtttctcaacttctattgcgaccctcactctaaaaatgattaa |
191 |
Q |
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| T |
4343429 |
aattaatgtgtccattattaggttgaagttcttctaaccctaatatgatgtgtaaatgtttctcaacttctattgcgaccttcactctaaaaatgattaa |
4343528 |
T |
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| Q |
192 |
gggtttatacaaggttttnnnnnnntgcctgcgacatcaaagtttttgatgtctctgcgaccacgattgaggctcaatcagctttcttcaactgngaata |
291 |
Q |
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| T |
4343529 |
gggtttatacaaggttttaaaaaaatgcctgcgacatcaaagtttttgatgtctctgcgaccacgattgaggctcaatcagctttcttcaactgcgaata |
4343628 |
T |
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| Q |
292 |
ttaag |
296 |
Q |
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||||| |
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| T |
4343629 |
ttaag |
4343633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 4343629 - 4343727
Alignment:
| Q |
1 |
ttaaggacaacaacgtggccactactatgatttaaaactttggctgcatgtgcacgtaatttncntctgagttggactaaaattttaatccaattaatg |
99 |
Q |
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| T |
4343629 |
ttaaggacaacaacgtggccactactatgatttaaaactttggctgcatgtgcacgtaatttaaatctgagttggactaaaattttaatccaattaatg |
4343727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 261
Target Start/End: Complemental strand, 12140677 - 12140641
Alignment:
| Q |
225 |
acatcaaagtttttgatgtctctgcgaccacgattga |
261 |
Q |
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| T |
12140677 |
acatcaaggtttttgatgtctctgcgatcacgattga |
12140641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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