View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5-9_25 (Length: 362)
Name: J5-9_25
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-9_25 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 362
Target Start/End: Complemental strand, 46938343 - 46937997
Alignment:
| Q |
15 |
taataatcttactgcctcaaaccatgtgcacaacatcagaaacaaggtttatttacttatttatgtacgnnccttgcttactggtcagcaaaatttataa |
114 |
Q |
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| T |
46938343 |
taataatcttactgcctcaaaccatgtgcacaacatcagaaacaaggtttatttacttatttatgtacgtat-ttgcttactggtcagcaaaatttataa |
46938245 |
T |
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| Q |
115 |
tatactatgttttctatttannnnnnnnatttaacnnnnnnntaacaacattgttttgataaatttatttatttacaatatatttccggtgtgttcatgt |
214 |
Q |
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| T |
46938244 |
tatactatgttttctatttattttttttatttaacaaaaaaataacaacattgttttgataaatttatttatttacaatatatttccggtgtgttcatgt |
46938145 |
T |
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| Q |
215 |
gcaggagtttgacaaagcctatggtcctgcctggcattgcattgtaggcccaagttttggttcttttgtgacacatccaacggggtgttttctttacttt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46938144 |
gcaggagtttgacaaagcctatggtcctgcctggcattgcattgtaggcccaagttttggttcttttgtgacacattcaacggggtgttttctttacttt |
46938045 |
T |
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| Q |
315 |
tcaatggaaaatttatatattctattgttcaggaccaaagttaagaag |
362 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
46938044 |
tcaatggaaaatttatatattctattgttcaagaccaaagttaagaag |
46937997 |
T |
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