View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: J5-9_77 (Length: 643)
Name: J5-9_77
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5-9_77 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 566; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 1 - 642
Target Start/End: Complemental strand, 44866266 - 44865624
Alignment:
| Q |
1 |
attactggtcagaatgattgcacgatcctgtttcgcaagcttgataacattccataggcatttccttgaagcagggtctaatccagtacttggttcatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44866266 |
attactggtcagaatgattgcacgatcctgtttcgcaagcttgataacattccataggcatttccttgaagcagggtctaatccagtacttggttcatcc |
44866167 |
T |
|
| Q |
101 |
atataaacaacctaaatttgaattgtcatttacaaaatacgaaaacatgaatctccnnnnnnnattaaaagaaatgaaaaagatcaaatagggttgaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
44866166 |
atataaacaacctaaatttgaattgtcatttacaaaatacgaaaacatgaatctcctttttttattaaaagaaatgaaaaagatcaaatagggttgaaac |
44866067 |
T |
|
| Q |
201 |
aaaaacaaactttggggtccccaatcaatgaaattgcaacactaagcctcctcttcatccctccactgtattttccagcttttttatcagcaacccctcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44866066 |
aaaaacaaactttggggtccccaatcaatgaaattgcaacactaagcctcctcttcatccctccactgtattttccagcttttttatcagcaacccctcc |
44865967 |
T |
|
| Q |
301 |
atggaaaaggtttaaattcttcaaagattcttctactgcctgtaacagtagaatgcaagctaaatagttacgattttacctttcaaacaaatggcagcta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44865966 |
atggaaaaggtttaaattcttcaaagattcttctactgcctgtaacagtagaatgcaagctaaatagttacgattttacctttcaaacaaatggcagcta |
44865867 |
T |
|
| Q |
401 |
aagaggaagttgttcaaaatacatcttaactgcaattatcttttacagatccgtactcttcacagaataataagcaataaaaattgcaggag-aacatgt |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44865866 |
aagaggaagttgttcaaaatacatcttaactgcaattatcttttacagatccgtactcttcacagaataataagcaataaaaattgcaggagaaacatgt |
44865767 |
T |
|
| Q |
500 |
tactaaaggacctaaaatgtgttttgtcttcnccacannnnnnnaaatactttattctgaatcncgctgagatgattcatagggtaatcataaaaanccc |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
44865766 |
tactaaaggacctaaaatgtgttttgtcttctccacatttttttaaatactttattctgaatcacgctgagatgattcata-ggtaatcataaaaaaccc |
44865668 |
T |
|
| Q |
600 |
gttccttta-tggnttattataaaattacagggtccttgaacaa |
642 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
44865667 |
gttcctttattggtttattataaaattacagggtccttgaacaa |
44865624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 3 - 529
Target Start/End: Complemental strand, 44900853 - 44900318
Alignment:
| Q |
3 |
tactggtcagaatgattgcacgatcctgtttcgcaagcttgataacattccataggcatttccttgaagcagggtctaatccagtacttggttcatccat |
102 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
44900853 |
tactggttagaatgattgcacgatcctgtttcgcaagcctgataacattccataggcatttccttgaagcagggtctaatcccgtgcttggctcatccat |
44900754 |
T |
|
| Q |
103 |
ataaacaacctaaatttgaattgtcatttacaaaatacgaaaacatgaatctccnnnnnnnattaaaagaaatgaaaaaga--------tcaaatagggt |
194 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| |||| |||||| ||||||| ||||||| |||||||||||| |||||| ||| |
|
|
| T |
44900753 |
ataaacaacctaaatttgaattggcatgtacagaataagaaaacttgaatctt-attttttattaaaa-aaatgaaaaagaaaaaaaaatcaaatttggt |
44900656 |
T |
|
| Q |
195 |
tgaaacaaaaaca--aactttggggtccccaatcaatgaaattgcaacactaagcctcctcttcatccctccactgtattttccagcttttttatcagca |
292 |
Q |
| |
|
||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
44900655 |
tgaaataaaaaaactaactttggggtccccaatcaatgaaattgcaacactaagcctcctcttcatccctccactgtattttcctgcttgcttatcagca |
44900556 |
T |
|
| Q |
293 |
acccctccatggaaaaggtttaaattcttcaaagattcttctactgcctgtaacagtagaatgcaagctaaatagttacgattttacctttcaaacaaat |
392 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||| ||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
44900555 |
acacctccatggaaaaggtttaaattcttcaaagattcttctactgcctgcaacaataaaatggaagctaaatagttacaattttccctttcaagcaaat |
44900456 |
T |
|
| Q |
393 |
ggcagctaaagaggaagttgttcaaaatacatcttaactgcaattatcttttacagatccgtactcttc---acagaataataagcaataaaaattgcag |
489 |
Q |
| |
|
| || | ||||||||||||||| ||| | ||||| ||||||||| |||||||| |||||| ||||||| |||||| |||| ||||||||||||| | |
|
|
| T |
44900455 |
gccatcaaaagaggaagttgtttaaattgcatctaaactgcaatcatcttttatagatccagactcttctcaacagaaaaatatgcaataaaaattg--g |
44900358 |
T |
|
| Q |
490 |
gagaacatgttactaaaggacctaaaatgtgttttgtctt |
529 |
Q |
| |
|
| || |||||| |||| ||||||||||||||||||||| |
|
|
| T |
44900357 |
ggaaatatgttatgaaagcacctaaaatgtgttttgtctt |
44900318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 2 - 371
Target Start/End: Complemental strand, 44851940 - 44851564
Alignment:
| Q |
2 |
ttactggtcagaatgattgcacgatcctgtttcgcaagcttgataacattccataggcatttccttgaagcagggtctaatccagtacttggttcatcca |
101 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44851940 |
ttactggtcagaataattgcacgatcctgtttcgcaagcttgataacattccataggcatttccttgaagcagggtctaatccagtacttggctcatcca |
44851841 |
T |
|
| Q |
102 |
tataaacaacctaaatttgaattgtcatttacaaaatacgaaaacatgaatctccnnnnnnnattaaaagaaatgaaaaaga-------tcaaatagggt |
194 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||| |||| |||||| ||||||| ||||||| |||||||||||| |||||| ||| |
|
|
| T |
44851840 |
tataaacaacctaaatttgaattggcatgtacagaataagaaaacttgaatctt-attttttattaaaa-aaatgaaaaagaaaaaatgtcaaattcggt |
44851743 |
T |
|
| Q |
195 |
tgaaacaaaaa--caaactttggggtccccaatcaatgaaattgcaacactaagcctcctcttcatccctccactgtattttccagcttttttatcagca |
292 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
44851742 |
tgaaataaaaaaacaaactttggggtccccaatcaatgaaattgcaacactaagtctcctcttcatccctccactgtattttccacattgtttatcagca |
44851643 |
T |
|
| Q |
293 |
acccctccatggaaaaggtttaaattcttcaaagattcttctactgcctgtaacagtagaatgcaagctaaatagttac |
371 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||| || |||| |||||||||||||| |
|
|
| T |
44851642 |
acccctccatagaaaaggtttaaactcttcaaagattcttctactgcctgtaacaatataatggtagctaaatagttac |
44851564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 44884140 - 44883785
Alignment:
| Q |
1 |
attactggtcagaatgattgcacgatcctgtttcgcaagcttgataacattccataggcatttccttgaagcagggtctaatccagtacttggttcatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||| ||||||||||||||||| |||||||| |||||| |
|
|
| T |
44884140 |
attactggtcagaatgattgcacgatcctgtttcgcaagcctgatagcattccataggcaattcctagaagcagggtctaatccggtacttggctcatcc |
44884041 |
T |
|
| Q |
101 |
atataaacaacctaaatttgaattgtcatttacaaaatacgaaaacatgaatctccnnnnnnnattaaaagaa--atgaaaaag-------atcaaatag |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||| | ||||||| || ||||||||| ||||||| | |
|
|
| T |
44884040 |
atataaacaacctaaatttgaattgtcatttacaaaatacaaaaacttgaatcttcatattt-attaaaaaaagaatgaaaaaggaaaatgatcaaattg |
44883942 |
T |
|
| Q |
192 |
ggttgaaa-caaaaacaaactttggggtccccaatcaatgaaattgcaacactaagcctcctcttcatccctccactgtattttccagcttttttatcag |
290 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44883941 |
agttgaaaacagaaacaaactttggggtccccaatcaatgaaatggcaacactaagcctcctcttcatccctccactgtattttccagcttgtttatcag |
44883842 |
T |
|
| Q |
291 |
caacccctccatggaaaaggtttaaattcttcaaagattcttctactgcctgtaaca |
347 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
44883841 |
caacccctccatagaaaaggtttaaaaccttcaaagattcttctactgcctgcaaca |
44883785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 201 - 445
Target Start/End: Complemental strand, 44840247 - 44840003
Alignment:
| Q |
201 |
aaaaacaaactttggggtccccaatcaatgaaattgcaacactaagcctcctcttcatccctccactgtattttccagcttttttatcagcaacccctcc |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
44840247 |
aaaaacaaactctggggtccccaatcaatgaaattgcaacactaagcctcctcttcatccctccactgtattttccagcttgtttatcagcaatccctcc |
44840148 |
T |
|
| Q |
301 |
atggaaaaggtttaaattcttcaaagattcttctactgcctgtaacagtagaatgcaagctaaatagttacgattttacctttcaaacaaatggcagcta |
400 |
Q |
| |
|
|||| ||||||| ||| |||||||||||||||||||||||||||||| || |||| | |||||||||||| | || ||| ||||||||| | ||||| |
|
|
| T |
44840147 |
atggtaaaggttcaaactcttcaaagattcttctactgcctgtaacaatataatggatgctaaatagttaaaaaattccctgtcaaacaaaggcaagcta |
44840048 |
T |
|
| Q |
401 |
aagaggaagttgttcaaaatacatcttaactgcaattatctttta |
445 |
Q |
| |
|
|||| |||||||||||| | ||||| ||||| ||| |||||||| |
|
|
| T |
44840047 |
cagagaaagttgttcaaattgcatctaaactgaaatcatctttta |
44840003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 44840457 - 44840314
Alignment:
| Q |
3 |
tactggtcagaatgattgcacgatcctgtttcgcaagcttgataacattccataggcatttccttgaagcagggtctaatccagtacttggttcatccat |
102 |
Q |
| |
|
|||| |||| |||||||||||| ||| ||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44840457 |
tactagtcaaaatgattgcacggtccagtttcgcaatcttgataacattccaaagccatttccttgaagcagggtctaatccagtacttggctcatccaa |
44840358 |
T |
|
| Q |
103 |
ataaacaacctaaatttgaattgtcatttacaaaatacgaaaac |
146 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||| |||||| |
|
|
| T |
44840357 |
ataaacaatctaaatttgaattggcatttacaaaataagaaaac |
44840314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 441 - 485
Target Start/End: Complemental strand, 44851543 - 44851499
Alignment:
| Q |
441 |
ttttacagatccgtactcttcacagaataataagcaataaaaatt |
485 |
Q |
| |
|
||||| |||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
44851543 |
ttttatagatccatactcttcacagaaaaataagcaataaaaatt |
44851499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 227 - 342
Target Start/End: Original strand, 12924838 - 12924953
Alignment:
| Q |
227 |
aatgaaattgcaacactaagcctcctcttcatccctccactgtattttccagcttttttatcagcaacccctccatggaaaaggtttaaattcttcaaag |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| || |||||||||| | | ||||||| |
|
|
| T |
12924838 |
aatgaaattgcaacactaagcctcctcttcattcctccactatattttccagcctttttatcagcaacccctccgtgaaaaaggtttacacttttcaaag |
12924937 |
T |
|
| Q |
327 |
attcttctactgcctg |
342 |
Q |
| |
|
||||||| || ||||| |
|
|
| T |
12924938 |
attcttccaccgcctg |
12924953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 12924677 - 12924725
Alignment:
| Q |
65 |
cttgaagcagggtctaatccagtacttggttcatccatataaacaacct |
113 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12924677 |
cttgacgcagggtctaatccagtacttggttcatccatataaacaacct |
12924725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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