View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: J5_11_10 (Length: 71)
Name: J5_11_10
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_11_10 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 34; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 32881977 - 32881944
Alignment:
| Q |
1 |
gtaaggaaattaaagggtgaggaatacaattaat |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
32881977 |
gtaaggaaattaaagggtgaggaatacaattaat |
32881944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 32886215 - 32886182
Alignment:
| Q |
1 |
gtaaggaaattaaagggtgaggaatacaattaat |
34 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
32886215 |
gtaaggaaattaaagggcgaggaatacaattaat |
32886182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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