View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: J5_11_16 (Length: 97)
Name: J5_11_16
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_11_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 60; Significance: 4e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 27841584 - 27841521
Alignment:
| Q |
1 |
caattaacataattgagatatagaagacaaaaattccacaattggaaggagagacttgattaat |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27841584 |
caattaacataattgagatatagaagacaaaaattccacaattggaagaagagacttgattaat |
27841521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 27841618 - 27841580
Alignment:
| Q |
59 |
attaattgttgcaatttgtgatatctaggagacccaatt |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27841618 |
attaattgttgcaatttgtgatatctaggagacccaatt |
27841580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 16316 times since January 2019
Visitors: 3768