View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_11_83 (Length: 575)
Name: J5_11_83
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_11_83 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 50 - 416
Target Start/End: Complemental strand, 12881651 - 12881285
Alignment:
| Q |
50 |
gtcttgaataatactgattcgtcacacagccaaacatgtaccaaaggttttgtttttcattgttttagttatcaggcaagcgagttggaattgttggatt |
149 |
Q |
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| T |
12881651 |
gtcttgaataatactgattcgtcacacagccaaacatgtaccaaaggttttgtttttcattgttttagttatcaggcaagcgagttggaattgttggatt |
12881552 |
T |
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| Q |
150 |
aggaagtattggcatggaagttgccaagcgactcgagccatttgattgcattatctcgtacaantctaagcatcaaaaaacatcaatttcgtaccctttc |
249 |
Q |
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| T |
12881551 |
aggaagtattggcatggaagttgccaagcgactcgagtcatttgattgcattatctcgtacaactctaagcatcaaaaaacatcaatttcgtaccctttc |
12881452 |
T |
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| Q |
250 |
tattccaatgttattgatcttgcaacttctagcgacgcacttgtggtatgttgtgcactaaacaaccaaacacgacacatagtaaacaaagatgtccttt |
349 |
Q |
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| T |
12881451 |
tattccaatgttattgatcttgcaacttctagcgacgcacttgtggtatgttgtgcactaaacaaccaaacacgacacatagtaaacaaagatgtccttt |
12881352 |
T |
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| Q |
350 |
tggcattaggaaaagaagggtttattgtaaatgttggaagaggtggtcttattgatgagaaacaatt |
416 |
Q |
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| T |
12881351 |
tggcattaggaaaagaagggtttattgtaaatgttggaagaggtggtcttattgatgagaaacaatt |
12881285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 413 - 573
Target Start/End: Complemental strand, 12881858 - 12881698
Alignment:
| Q |
413 |
aattcaggttgccngtgctggaggagttttctcggangatgtggctgatgtggcagtggcnttgctgattgctgtcatgaggaangtgacggnggcnaat |
512 |
Q |
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| T |
12881858 |
aattcaggttgccggtgctggaggagttttctcggaggatgtggctgatgtggcagtggcgttgctgattgctgtcatgaggaaggtgacggtggcgaat |
12881759 |
T |
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| Q |
513 |
ccgtatgtgangacgcggcgggnangttctgatccctgggaattcccncttgganacaagg |
573 |
Q |
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| T |
12881758 |
cggtatgtgaggacgcggcgggaacgttctgatccttgggatttccctcttggatacaagg |
12881698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 407
Target Start/End: Complemental strand, 12885747 - 12885648
Alignment:
| Q |
308 |
taaacaaccaaacacgacacatagtaaacaaagatgtccttttggcattaggaaaagaagggtttattgtaaatgttggaagaggtggtcttattgatga |
407 |
Q |
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| T |
12885747 |
taaacgaccaaacaaggcacattgtcaacaaagaagtcatgttggcattgggaaaaggaggaatcatagtgaatgttggaagaggtgctctcattgatga |
12885648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 168
Target Start/End: Original strand, 28453542 - 28453577
Alignment:
| Q |
133 |
gttggaattgttggattaggaagtattggcatggaa |
168 |
Q |
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| T |
28453542 |
gttggaattgttggattaggaagcattggcatggaa |
28453577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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