View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_11_85 (Length: 389)
Name: J5_11_85
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_11_85 |
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| [»] scaffold0323 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 22036142 - 22036385
Alignment:
| Q |
1 |
cacttctcctgctgatcatgcgtaaaatctatattttgactaccttgcatatataagtacacatagacatgtacatgtacatgaattggaatactataaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22036142 |
cacttctcctgctgatcatgcgtaaaatctatattttgactaccttgcatatataagtacacatagacatgtacatgtacatgaattggaatactataaa |
22036241 |
T |
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| Q |
101 |
tagtctaatattcttaattctcctttctattttcttatctaagataagtatttaattaatacacatgagatgtcagaaggttggctcaattttagaacaa |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
22036242 |
tagtctaatatttttaattctcctttctattttcttatctaagataagtatttaattaatacacatgagatgtcaaaaggttggctcaattttagaacaa |
22036341 |
T |
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| Q |
201 |
atgcagaaaggattttcattaggattttagtaaatcaaacaatt |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22036342 |
atgcagaaaggattttcattaggattttagtaaatcaaacaatt |
22036385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 241 - 389
Target Start/End: Original strand, 22035998 - 22036146
Alignment:
| Q |
241 |
aattcatccgtgagcgagacaatgcgagttagagagagatctgggagaccaagttaatgatgcatacatatgaattgacatgcttatatttgagaaatat |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22035998 |
aattcatccgtgagcgagacaatgcgagttagagagagatctgggagaccaagttaatgatgcatacatatgaattgacatgcttatatttgagaaatat |
22036097 |
T |
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| Q |
341 |
gagtttttgtataatcttactattaatgttacgatttacgatttcactt |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22036098 |
gagtttttgtataatcttactattaatgttacgatttacgatttcactt |
22036146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 50012157 - 50012190
Alignment:
| Q |
14 |
gatcatgcgtaaaatctatattttgactaccttg |
47 |
Q |
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| T |
50012157 |
gatcatgcgtaaaatctagattttgactaccttg |
50012190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0323 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0323
Description:
Target: scaffold0323; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 244
Target Start/End: Complemental strand, 9497 - 9411
Alignment:
| Q |
158 |
aatacacatgagatgtcagaaggttggctcaattttagaacaaatgcagaaaggattttcattaggattttagtaaatcaaacaatt |
244 |
Q |
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|||||||||||| || ||||||||| ||||| |||||||| |||||| || |||| ||| | | |||||||||||||||||||| |
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| T |
9497 |
aatacacatgaggtgccagaaggtttgctcagttttagaatgaatgcaaaagagattctcacaaagtttttagtaaatcaaacaatt |
9411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 44109197 - 44109230
Alignment:
| Q |
14 |
gatcatgcgtaaaatctatattttgactaccttg |
47 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
44109197 |
gatcatgcgtaaaatctagattttgactaccttg |
44109230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 389
Target Start/End: Complemental strand, 45641648 - 45641604
Alignment:
| Q |
345 |
ttttgtataatcttactattaatgttacgatttacgatttcactt |
389 |
Q |
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|||||||||||||||| |||| ||||| |||||||||||| |||| |
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| T |
45641648 |
ttttgtataatcttacgattactgttaggatttacgattttactt |
45641604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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