View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: J5_11_89 (Length: 631)
Name: J5_11_89
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_11_89 |
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Alignment Details
Target: chr5 (Bit Score: 540; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 1 - 614
Target Start/End: Complemental strand, 24889515 - 24888901
Alignment:
| Q |
1 |
tcaacaagctcaacaatttctgcatttcttgcttatattcaaattaaataattaccggactcnctatctccatattctgcatagcaggttaatgttacta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24889515 |
tcaacaagctcaacaatttctgcatttcttgcttatattcaaattaaataattaccggactcactatctccatattctgcatagcaggttaatgttacta |
24889416 |
T |
|
| Q |
101 |
ctttgtggcttgtcaaggacgatctccgataaacaaatcaagaatagcaaatgtagaacatatcgaaaacagatcaagaaaaggtggacggcctatnnnn |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24889415 |
ctttgtggcttgtcaaggacgatctccgataaacaaatcaagaatagcaaatgtagaacatatcgaaaacagatcaagaaaaggtggacggcctataaaa |
24889316 |
T |
|
| Q |
201 |
nnngataagtaattagtacttagtagtacttcattccgacattcaacctaagttaacagctacaacgacacatattcttcaccatataacttccagaatt |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24889315 |
aaagataagtaattagtacttagtagtacttcattccgacattcaacctaagttaacagctacaacgacacatattcttcaccatataacttccagaatt |
24889216 |
T |
|
| Q |
301 |
tttctaaacattacatatgaacacatacatatttttagttccacaaaaatcattatagaaaagtgtggagtcaattaaactataagtggtttttagaact |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24889215 |
tttctaaacattacatatgaacacatacatatttttagttccacaaaaatcattatagaaaagtgtggagtcaattaaactataactggtttttagaact |
24889116 |
T |
|
| Q |
401 |
ttttacataaaaactagttgaacattttatcacatttgacccaccaaatgacctcagattcaaacnaaggtaacataagtaaactaatagttctactctt |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
24889115 |
ttttacataaaaactagttgaacattttatcacatttgacccaccaaatgacctcagattcaaacaaaggtaacataagtaaactaatagttctactctt |
24889016 |
T |
|
| Q |
501 |
tggagaattaaagataaatcnatccagaaatttcnaatgac-aactctttaccttaacaaaaccncataagcaacaaacttcnaaatcccnttagaggng |
599 |
Q |
| |
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|||||||||||||||||||| ||| ||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| | |
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|
| T |
24889015 |
tggagaattaaagataaatcaatcaagaaatttcaaatgacaaactctttaccttaacaaaaccacataagcaacaaacttcaaaatcccattagagagg |
24888916 |
T |
|
| Q |
600 |
gacnaaatgngaaca |
614 |
Q |
| |
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|| ||||| ||||| |
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| T |
24888915 |
aacaaaatgagaaca |
24888901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 24899770 - 24899707
Alignment:
| Q |
133 |
acaaatcaagaatagcaaatgtagaacatatcgaaaacagatcaagaaaaggtggacggcctat |
196 |
Q |
| |
|
||||| ||||||||||||| |||||||| |||||||||||| |||| ||||| ||| ||||||| |
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|
| T |
24899770 |
acaaagcaagaatagcaaaagtagaacagatcgaaaacagaccaaggaaaggcggaaggcctat |
24899707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 7e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 315 - 596
Target Start/End: Complemental strand, 22857315 - 22857044
Alignment:
| Q |
315 |
atatgaacacatacatatttttagttccacaaaaatcattatagaaaagtgtggagtcaattaaactataagtggtttttagaactttttacataaaaac |
414 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||| || ||||||||| || || || |||||||| |||||||||||||||| |
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| T |
22857315 |
atatgaacacatacatatttttagctccacaaaaattattatagaaaagtgtagaatcaattaaa-tagaattgctttttagagctttttacataaaaac |
22857217 |
T |
|
| Q |
415 |
tagttgaacattttatcacatttgacccaccaaatgacctcagattcaaacnaaggtaacataagtaaactaatagttctactctttggagaattaaaga |
514 |
Q |
| |
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||||||||||||| ||||||||||||||||| ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||| ||| |
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| T |
22857216 |
cagttgaacatttt----------acccaccaaatgacctcggattcaaacaaaggtaacataaataaactaatagttttactctttggagaattagaga |
22857127 |
T |
|
| Q |
515 |
taaatcnatccagaaatttcnaatga-caactctttaccttaacaaaaccncataagcaacaaacttcnaaatcccnttagag |
596 |
Q |
| |
|
||||| ||| |||||||| ||||| | | |||| | ||||||||| ||||||||| ||||||| ||||||| |||||| |
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| T |
22857126 |
aaaatcaatcaagaaattttaaatgatgtaatttttatcggaacaaaaccacataagcaataaacttcaaaatcccattagag |
22857044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 1e-55; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 312 - 450
Target Start/End: Original strand, 39869376 - 39869514
Alignment:
| Q |
312 |
tacatatgaacacatacatatttttagttccacaaaaatcattatagaaaagtgtggagtcaattaaactataagtggtttttagaactttttacataaa |
411 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| || |||||||| ||||||||||||| |
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| T |
39869376 |
tacatatcaacacatacatatttttagttccacaaaaatcattatagaaaagtgtagaatcaattaaactataattgatttttagagctttttacataaa |
39869475 |
T |
|
| Q |
412 |
aactagttgaacattttatcacatttgacccaccaaatg |
450 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
39869476 |
aactagttgaacattttatcacatttgactcaccaaatg |
39869514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 439 - 594
Target Start/End: Original strand, 39870311 - 39870467
Alignment:
| Q |
439 |
acccaccaaatgacctcagattcaaacnaaggtaacataagtaaactaatagttctactctttggagaattaaagataaatcnatccagaaatttcnaat |
538 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||| | |||| ||||| ||||||||||||||||||||| ||||| || ||||||||| ||| |
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| T |
39870311 |
acccaccaaatgacctcggattcaaacaaaggtaacataaatgtactattagttttactctttggagaattaaagaaaaatcaataaagaaatttcaaat |
39870410 |
T |
|
| Q |
539 |
gac-aactctttaccttaacaaaaccncataagcaacaaacttcnaaatcccnttag |
594 |
Q |
| |
|
||| || | |||||| ||||||||| ||||||||||||||||| ||||||| |||| |
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|
| T |
39870411 |
gacaaaatttttaccgaaacaaaaccacataagcaacaaacttcaaaatcccattag |
39870467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 239 - 307
Target Start/End: Original strand, 39869257 - 39869325
Alignment:
| Q |
239 |
acattcaacctaagttaacagctacaacgacacatattcttcaccatataacttccagaatttttctaa |
307 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||| | ||||||| |||||| ||||||||||||| |
|
|
| T |
39869257 |
acattcaaccaaagttaacaactacaacgacacatattatgcaccatacaacttcaagaatttttctaa |
39869325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 374 - 455
Target Start/End: Original strand, 33163013 - 33163095
Alignment:
| Q |
374 |
attaaactataagtggtttttagaactttttacataaaa-actagttgaacattttatcacatttgacccaccaaatgacctc |
455 |
Q |
| |
|
|||||||||||| |||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33163013 |
attaaactataactggtttttggagcttttaacataaaaaactagttgaacattttatcacatttgacccaccaaatgacctc |
33163095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 312 - 366
Target Start/End: Original strand, 33162202 - 33162256
Alignment:
| Q |
312 |
tacatatgaacacatacatatttttagttccacaaaaatcattatagaaaagtgt |
366 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33162202 |
tacatatgaagacatacttatttttagttccacaaaaatcattatagaaaagtgt |
33162256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 33162087 - 33162152
Alignment:
| Q |
243 |
tcaacctaagttaacagctacaacgacacatattcttcaccatataacttccagaatttttctaaa |
308 |
Q |
| |
|
|||||| || ||||||||||||||||||||| |||| |||| |||||| || |||||||||||||| |
|
|
| T |
33162087 |
tcaaccaaaattaacagctacaacgacacattttctgcaccgtataacatcaagaatttttctaaa |
33162152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 506 - 588
Target Start/End: Original strand, 33163126 - 33163209
Alignment:
| Q |
506 |
aattaaagataaatcnatccagaaatttcnaatgacaa-ctctttaccttaacaaaaccncataagcaacaaacttcnaaatcc |
588 |
Q |
| |
|
||||| ||| ||||| ||| ||||||||| |||||||| || |||||| ||||||||| |||||||||||||||| |||||| |
|
|
| T |
33163126 |
aattagagaaaaatcaatcaagaaatttcaaatgacaaactttttaccggaacaaaaccacataagcaacaaactttaaaatcc |
33163209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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