View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: J5_11_90 (Length: 321)
Name: J5_11_90
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] J5_11_90 |
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[»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 123 - 299
Target Start/End: Complemental strand, 44448877 - 44448701
Alignment:
Q |
123 |
ctagctcctaaggaacaaagctcccatctcatctgtcaaaagcagcgacagcaggtcttcaggaagagatgagtagacagttaaatcaacatctgttgta |
222 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
44448877 |
ctagctcctaaggaacaaagctcccatctcatctgtcaaaagcagcgacagcaggtcttcaggaagagatgagtagacagttaaatcaacatctgttgta |
44448778 |
T |
|
Q |
223 |
gctcctagcttcgccataaagtctgcacaatgattaccctctctaagcgagtgatgaatagagtaatttcttgaatt |
299 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
44448777 |
gctcctagcttcgccataaagtctgcacaatgattaccctctctaagcgagtgatgaatagagtaatttcttgaatt |
44448701 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 128 - 293
Target Start/End: Complemental strand, 48612473 - 48612308
Alignment:
Q |
128 |
tcctaaggaacaaagctcccatctcatctgtcaaaagcagcgacagcaggtcttcaggaagagatgagtagacagttaaatcaacatctgttgtagctcc |
227 |
Q |
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|
||||||||||||||| ||||||||||||||| ||||||| |||||||| ||||||| ||||||||| ||||||||||||||||| | ||||||| || |
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|
T |
48612473 |
tcctaaggaacaaagttcccatctcatctgtgctaagcagcagcagcaggttttcaggaggagatgagtggacagttaaatcaacatatattgtagcccc |
48612374 |
T |
|
Q |
228 |
tagcttcgccataaagtctgcacaatgattaccctctctaagcgagtgatgaatagagtaatttct |
293 |
Q |
|
|
||||||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||||||| |
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|
T |
48612373 |
tagcttcgccataaagttcgcacaatgattgccctctctaagcgagtgatggatggagtaatttct |
48612308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 44448998 - 44448950
Alignment:
Q |
1 |
gaagcatagggacactctaaggggtattcgcaaatttcctaataaacta |
49 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
T |
44448998 |
gaagcatagggacactctaaggggtattcgcaaatttcctaataaacta |
44448950 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 49147775 - 49147821
Alignment:
Q |
235 |
gccataaagtctgcacaatgattaccctctctaagcgagtgatgaat |
281 |
Q |
|
|
||||||||||||||||| ||||| ||||||||||| ||||||||||| |
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|
T |
49147775 |
gccataaagtctgcacactgatttccctctctaagtgagtgatgaat |
49147821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 123 - 299
Target Start/End: Complemental strand, 24601715 - 24601539
Alignment:
Q |
123 |
ctagctcctaaggaacaaagctcccatctcatctgtcaaaagcagcgacagcaggtcttcaggaagagatgagtagacagttaaatcaacatctgttgta |
222 |
Q |
|
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
T |
24601715 |
ctagttcctaaggaacaaagttcccatctcatctgtcaaaagcagcgacagcaggtcttcaggaggagatgagtagacagttaaatcaacatctgttgta |
24601616 |
T |
|
Q |
223 |
gctcctagcttcgccataaagtctgcacaatgattaccctctctaagcgagtgatgaatagagtaatttcttgaatt |
299 |
Q |
|
|
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
T |
24601615 |
gctcctagcttcgccataaagtccacacaatgattaccctctctgagcgagtgatgaatagagtaatttcttgaatt |
24601539 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 23204472 - 23204398
Alignment:
Q |
222 |
agctcctagcttcgccataaagtctgcacaatgattaccctctctaagcgagtgatgaatagagtaatttcttga |
296 |
Q |
|
|
||||| |||||| |||| || || ||||| |||||||| |||||||||||||| |||| |||| |||||||||| |
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|
T |
23204472 |
agctcatagcttaaccatgaaatccgcacactgattaccttctctaagcgagtgttgaagagagaaatttcttga |
23204398 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 123 - 299
Target Start/End: Complemental strand, 7818168 - 7817992
Alignment:
Q |
123 |
ctagctcctaaggaacaaagctcccatctcatctgtcaaaagcagcgacagcaggtcttcaggaagagatgagtagacagttaaatcaacatctgttgta |
222 |
Q |
|
|
|||| ||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
T |
7818168 |
ctagttcctaaggaacaaagttcccatctcatctatcaaaagcagcgacagcatgtcttcaggaggagatgagtagacagttaaatcaacatctgttgta |
7818069 |
T |
|
Q |
223 |
gctcctagcttcgccataaagtctgcacaatgattaccctctctaagcgagtgatgaatagagtaatttcttgaatt |
299 |
Q |
|
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
T |
7818068 |
gctcctagcttcgccataaagtccgcacaatgattaccctctctgagcgagtgatgaatagagtaatttcttgaatt |
7817992 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 123 - 299
Target Start/End: Original strand, 1485207 - 1485383
Alignment:
Q |
123 |
ctagctcctaaggaacaaagctcccatctcatctgtcaaaagcagcgacagcaggtcttcaggaagagatgagtagacagttaaatcaacatctgttgta |
222 |
Q |
|
|
|||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
T |
1485207 |
ctagttcctaaggaataaagttcccatctcatctgtcaaaagcagcgacagcaggtcttcaagaagagatgagtagacagttaaatcaacatctgttgta |
1485306 |
T |
|
Q |
223 |
gctcctagcttcgccataaagtctgcacaatgattaccctctctaagcgagtgatgaatagagtaatttcttgaatt |
299 |
Q |
|
|
|||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||||||| |||||||||||||||| |
|
|
T |
1485307 |
gctcctagcttcgccacaaagtccacacaatgattaccctatctgaacgagtgatgaataaagtaatttcttgaatt |
1485383 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 35297175 - 35297130
Alignment:
Q |
235 |
gccataaagtctgcacaatgattaccctctctaagcgagtgatgaa |
280 |
Q |
|
|
||||||||||||||||| ||||| |||||||| || |||||||||| |
|
|
T |
35297175 |
gccataaagtctgcacactgatttccctctctgagtgagtgatgaa |
35297130 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 123 - 299
Target Start/End: Original strand, 23906449 - 23906625
Alignment:
Q |
123 |
ctagctcctaaggaacaaagctcccatctcatctgtcaaaagcagcgacagcaggtcttcaggaagagatgagtagacagttaaatcaacatctgttgta |
222 |
Q |
|
|
|||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| |
|
|
T |
23906449 |
ctagttcctaaggaacaaagtttccatctcatctgtcaaaagcagcgacagcaggtcttcagaaggagaggagtagacagttaaatcaacatctgttgta |
23906548 |
T |
|
Q |
223 |
gctcctagcttcgccataaagtctgcacaatgattaccctctctaagcgagtgatgaatagagtaatttcttgaatt |
299 |
Q |
|
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
T |
23906549 |
gctcctagcttcgccataaagtccgcacaatgattaccctctctgagcgagtgatgaatagagtaatttcttgaatt |
23906625 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 123 - 299
Target Start/End: Original strand, 9003368 - 9003544
Alignment:
Q |
123 |
ctagctcctaaggaacaaagctcccatctcatctgtcaaaagcagcgacagcaggtcttcaggaagagatgagtagacagttaaatcaacatctgttgta |
222 |
Q |
|
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
T |
9003368 |
ctagttcctaaggaacaaagttcccatctcatctgtcaaaagcagcgacaacaggtcttcaggaggatatgagtagacagttaaatcaacatctgttgta |
9003467 |
T |
|
Q |
223 |
gctcctagcttcgccataaagtctgcacaatgattaccctctctaagcgagtgatgaatagagtaatttcttgaatt |
299 |
Q |
|
|
||||||||||||||||||||||| ||||||||| |||||||| | |||||||||||||||||||||||||||||||| |
|
|
T |
9003468 |
gctcctagcttcgccataaagtccgcacaatgactaccctctttgagcgagtgatgaatagagtaatttcttgaatt |
9003544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 123 - 299
Target Start/End: Original strand, 7429923 - 7430099
Alignment:
Q |
123 |
ctagctcctaaggaacaaagctcccatctcatctgtcaaaagcagcgacagcaggtcttcaggaagagatgagtagacagttaaatcaacatctgttgta |
222 |
Q |
|
|
|||| ||||||||||||| | ||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
T |
7429923 |
ctagttcctaaggaacaaggttcccatctcatctgtcaaaaggagcgacaacaggtcttcaggaggagatgagtagacagttaaatcaacatctgttgta |
7430022 |
T |
|
Q |
223 |
gctcctagcttcgccataaagtctgcacaatgattaccctctctaagcgagtgatgaatagagtaatttcttgaatt |
299 |
Q |
|
|
| ||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
T |
7430023 |
gatcctagcttcgccataaagtccgcacaatgattaccctctatgagcgagtgatgaatagagtaatttcttgaatt |
7430099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 123 - 299
Target Start/End: Complemental strand, 7556008 - 7555832
Alignment:
Q |
123 |
ctagctcctaaggaacaaagctcccatctcatctgtcaaaagcagcgacagcaggtcttcaggaagagatgagtagacagttaaatcaacatctgttgta |
222 |
Q |
|
|
|||| ||||||||||||||| || |||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
T |
7556008 |
ctagatcctaaggaacaaagttctcatctcatatgtcaaaagcagcgacagcagatcttcaggatgagatgagtagacagttaaatcaacatcttttgta |
7555909 |
T |
|
Q |
223 |
gctcctagcttcgccataaagtctgcacaatgattaccctctctaagcgagtgatgaatagagtaatttcttgaatt |
299 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||| |
|
|
T |
7555908 |
gctcctagcttcgccataaagtctgcacaatgattacccactctgagcgagtgatgaataaagtaatttcttgaatt |
7555832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 123 - 266
Target Start/End: Original strand, 395610 - 395753
Alignment:
Q |
123 |
ctagctcctaaggaacaaagctcccatctcatctgtcaaaagcagcgacagcaggtcttcaggaagagatgagtagacagttaaatcaacatctgttgta |
222 |
Q |
|
|
|||| |||||||||| |||| |||||||||||||||||||||||||||||| || |||| |||| |||||||||||||||||||||||||||| |||||| |
|
|
T |
395610 |
ctagttcctaaggaataaagttcccatctcatctgtcaaaagcagcgacagtagatctttaggaggagatgagtagacagttaaatcaacatcagttgta |
395709 |
T |
|
Q |
223 |
gctcctagcttcgccataaagtctgcacaatgattaccctctct |
266 |
Q |
|
|
|||| || |||||| ||||| || |||||||||||||||||||| |
|
|
T |
395710 |
gctcataacttcgcaataaaatccgcacaatgattaccctctct |
395753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 296
Target Start/End: Complemental strand, 8533618 - 8533530
Alignment:
Q |
208 |
tcaacatctgttgtagctcctagcttcgccataaagtctgcacaatgattaccctctctaagcgagtgatgaatagagtaatttcttga |
296 |
Q |
|
|
||||||| ||||| |||| |||| |||||||||||||| ||||| || ||||||||| | ||||||||||||| |||||||||||||| |
|
|
T |
8533618 |
tcaacatatgttgaagctgctagtttcgccataaagtccgcacattggttaccctctatgagcgagtgatgaagcgagtaatttcttga |
8533530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 55719679 - 55719731
Alignment:
Q |
223 |
gctcctagcttcgccataaagtctgcacaatgattaccctctctaagcgagtg |
275 |
Q |
|
|
||||| ||||| ||||||||||||||||| || || ||||| ||||||||||| |
|
|
T |
55719679 |
gctccaagcttggccataaagtctgcacactggttgccctccctaagcgagtg |
55719731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 296
Target Start/End: Complemental strand, 19860174 - 19860052
Alignment:
Q |
174 |
caggtcttcaggaagagatgagtagacagttaaatcaacatctgttgtagctcctagcttcgccataaagtctgcacaatgattaccctctctaagcgag |
273 |
Q |
|
|
||||||||||||| |||| || | || |||| |||||| |||||| |||||||| ||| | ||||| || ||| | || ||||||||||| |||||| |
|
|
T |
19860174 |
caggtcttcaggaggagaagaatggatttttaattcaacacctgttgaggctcctagtttcacaataaaatccgcatattgcttaccctctctgagcgag |
19860075 |
T |
|
Q |
274 |
tgatgaatagagtaatttcttga |
296 |
Q |
|
|
||||||| ||| |||||||||| |
|
|
T |
19860074 |
tgatgaagcgagaaatttcttga |
19860052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 27601439 - 27601365
Alignment:
Q |
222 |
agctcctagcttcgccataaagtctgcacaatgattaccctctctaagcgagtgatgaatagagtaatttcttga |
296 |
Q |
|
|
|||||||||||| ||||| || || ||| | |||||||| |||||||||||| | |||| |||| |||||||||| |
|
|
T |
27601439 |
agctcctagcttagccatgaaatccgcatactgattaccttctctaagcgagggctgaagagagaaatttcttga |
27601365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 14111 - 14066
Alignment:
Q |
235 |
gccataaagtctgcacaatgattaccctctctaagcgagtgatgaa |
280 |
Q |
|
|
||||||||||||||||| ||||| |||||||| || |||||||||| |
|
|
T |
14111 |
gccataaagtctgcacactgatttccctctctgagtgagtgatgaa |
14066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 16700371 - 16700323
Alignment:
Q |
248 |
cacaatgattaccctctctaagcgagtgatgaatagagtaatttcttga |
296 |
Q |
|
|
|||| |||||||| |||||||||||||| |||| |||| |||||||||| |
|
|
T |
16700371 |
cacactgattaccttctctaagcgagtgctgaaaagagaaatttcttga |
16700323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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