View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_11_96 (Length: 442)
Name: J5_11_96
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_11_96 |
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| [»] chr1 (10 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 209 - 442
Target Start/End: Complemental strand, 34977609 - 34977377
Alignment:
| Q |
209 |
gaagttttactttgataacagaaccagaaatattgccaatgcatttttacaattagatatggaagaaaatgttcaccttttctgacccttgggatggcgt |
308 |
Q |
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| T |
34977609 |
gaagttttactttgataacagaaccagaaatattgccaatgcatttttacaattagatatggaagaaaatgttcaccttttctgacccttgg-atggcgt |
34977511 |
T |
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| Q |
309 |
gtgatatctatccctttaggaaaccgtactctcgaggttctttaagtgttggatcccagaangaaccgtctcgaggttggggatttcgaataactcaagc |
408 |
Q |
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| T |
34977510 |
gtgatatctatccctttaggaaaccgtactctcgaggttctttaagtgttggatcccagaaggaaccgtctcgaggttggggatttcgaataactcaagc |
34977411 |
T |
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| Q |
409 |
ttttttagagaatgcaatgcncctttatcgataa |
442 |
Q |
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| T |
34977410 |
ttttttagagaatgcaatgctcctttatcgataa |
34977377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 34977818 - 34977686
Alignment:
| Q |
1 |
ccaatcacctacatattaacaacaaattatcactactgtggagattagactgctcagagtgaaaggattccaaccaaaaacctcttgagggcacaacaca |
100 |
Q |
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| T |
34977818 |
ccaatcacctacatattaacaacaaattatcactactgtggagattagactgctcagaatgaaaggattccaaccaaaaacctcttgagggcacaacaca |
34977719 |
T |
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| Q |
101 |
ataagtatcttataattattgatgtagaataac |
133 |
Q |
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| T |
34977718 |
ataagtatcttataattattgatgtagaataac |
34977686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 34985068 - 34984944
Alignment:
| Q |
7 |
acctacatattaacaacaaattatcactactgtggagattagactgctcagagtgaaaggattccaaccaaaaacctcttgagggcacaacacaataagt |
106 |
Q |
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||||||| |||||||||||||||| |||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34985068 |
acctacagattaacaacaaattattactattgtggagattagactgctcagaatgtaaggattccaaccaaaaacctcttgagggcacaacacaataaaa |
34984969 |
T |
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| Q |
107 |
atcttataattattgatgtagaata |
131 |
Q |
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| T |
34984968 |
accttataattattgatgtagaata |
34984944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 34991757 - 34991635
Alignment:
| Q |
9 |
ctacatattaacaacaaattatcactactgtggagattagactgctcagagtgaaaggattccaaccaaaaacctcttgagggcacaacacaataagtat |
108 |
Q |
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| T |
34991757 |
ctacagattaacaacaaattattactattgtggagattagactgctcaggatgtaaggattccaaccaaaaaaatcttga-ggcacaacacaataaaaac |
34991659 |
T |
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| Q |
109 |
cttataattattgatgtagaataa |
132 |
Q |
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| T |
34991658 |
cttataattattaatgtagaataa |
34991635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 210 - 291
Target Start/End: Complemental strand, 34984866 - 34984787
Alignment:
| Q |
210 |
aagttttactttgataacagaaccagaaatattgccaatgcatttttacaattagatatggaagaaaatgttcaccttttct |
291 |
Q |
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| T |
34984866 |
aagttttactttgatgacagaaccagaaatattgccaatacatttttacaatt--atatggaagaaaatgttcaccttttct |
34984787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 2303542 - 2303671
Alignment:
| Q |
7 |
acctacatattaacaacaaattatcactactgtggagattagactgctcagagtgaaaggattccaaccaaaaacctcttgagggcaca---acacaata |
103 |
Q |
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||||||| |||||||||||||||| |||| ||||||||||||||||||||| ||||| ||||||||||||||||||||| || |||| ||||| || |
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| T |
2303542 |
acctacagattaacaacaaattattactatggtggagattagactgctcagaatgaaatgattccaaccaaaaacctcttttggacacaaacacacagta |
2303641 |
T |
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| Q |
104 |
agtatcttataattattgatgtagaataac |
133 |
Q |
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| T |
2303642 |
aaaaccttataattattgatctagaataac |
2303671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 352 - 442
Target Start/End: Original strand, 2303859 - 2303949
Alignment:
| Q |
352 |
aagtgttggatcccagaangaaccgtctcgaggttggggatttcgaataactcaagcttttttagagaatgcaatgcncctttatcgataa |
442 |
Q |
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| T |
2303859 |
aagtgttggattccagaaggaacattcttgaggttggggattttgaataactcgaacttttttagagaatgcaatgctcctttatcgataa |
2303949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 346 - 442
Target Start/End: Complemental strand, 34984671 - 34984581
Alignment:
| Q |
346 |
ttctttaagtgttggatcccagaangaaccgtctcgaggttggggatttcgaataactcaagcttttttagagaatgcaatgcncctttatcgataa |
442 |
Q |
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|||| ||||||||||||||||||| |||| ||||||||| ||| |||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
34984671 |
ttctctaagtgttggatcccagaaggaac------gaggttgggcattccgaataactcaaacttttttagagaatgcaatgctcctttatcgataa |
34984581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 376 - 442
Target Start/End: Complemental strand, 34991322 - 34991256
Alignment:
| Q |
376 |
gtctcgaggttggggatttcgaataactcaagcttttttagagaatgcaatgcncctttatcgataa |
442 |
Q |
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|||| |||||||||||| ||||||||||||| ||||||||||||||| ||||| |||||||| |||| |
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| T |
34991322 |
gtcttgaggttggggatctcgaataactcaaacttttttagagaatgtaatgctcctttatcaataa |
34991256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 34991554 - 34991522
Alignment:
| Q |
214 |
tttactttgataacagaaccagaaatattgcca |
246 |
Q |
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| T |
34991554 |
tttactttgatgacagaaccagaaatattgcca |
34991522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 9e-34; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 40582387 - 40582270
Alignment:
| Q |
16 |
ttaacaacaaattatcactactgtggagattagactgctcagagtgaaaggattccaaccaaaaacctcttgagggcacaacacaataagtatcttataa |
115 |
Q |
| |
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||||||||||||||| |||| |||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| ||||||||||| | ||||||| |
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| T |
40582387 |
ttaacaacaaattattactattgtggagattagactgcttagaatgaaatgattccaaccaaaaacctcttgagggtacaacacaatagaaaccttataa |
40582288 |
T |
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| Q |
116 |
ttattgatgtagaataac |
133 |
Q |
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||||||| |||||||||| |
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| T |
40582287 |
ttattgacgtagaataac |
40582270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 354 - 442
Target Start/End: Complemental strand, 40582022 - 40581934
Alignment:
| Q |
354 |
gtgttggatcccagaangaaccgtctcgaggttggggatttcgaataactcaagcttttttagagaatgcaatgcncctttatcgataa |
442 |
Q |
| |
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|||||||||||||||| ||||||||| |||||||||||| | ||||||||||| | |||||||||||||||||| ||||||||||||| |
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| T |
40582022 |
gtgttggatcccagaaggaaccgtcttgaggttggggatatggaataactcaaacaattttagagaatgcaatgctcctttatcgataa |
40581934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 40582189 - 40582138
Alignment:
| Q |
212 |
gttttactttgataacagaaccagaaatattgccaatgcatttttacaatta |
263 |
Q |
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||||| ||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
40582189 |
gttttgctttgatgacagaaccagaaatattgccaatatatttttacaatta |
40582138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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