View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_14_10 (Length: 123)
Name: J5_14_10
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_14_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 1e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 38899699 - 38899577
Alignment:
| Q |
1 |
ccaatcgaattaaataattggataatgaaacctgttcctcttcacatcacatgatcaacacatgtaatcatacaaatgtatatataccaaaattcatcga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38899699 |
ccaatcgaattaaataattggataatgaaacctgttcctcttcacatcacatgatcaacacatgtaatcatacaaatgtatatataccaaaattcatcga |
38899600 |
T |
|
| Q |
101 |
ttcactgtccctacataacatgc |
123 |
Q |
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||||||||||||||||||||||| |
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| T |
38899599 |
ttcactgtccctacataacatgc |
38899577 |
T |
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