View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_14_73 (Length: 654)
Name: J5_14_73
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_14_73 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 87 - 552
Target Start/End: Complemental strand, 32259022 - 32258559
Alignment:
| Q |
87 |
tcaccttcactgaagttaggatgtcctgaatccaaaactttagccactccaaatccatttataggctgcaaagttaacatccnaaagaaacaagtaaaac |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32259022 |
tcaccttcactgaagttaggatgtcctgaatccaaaactttagccactccaaatccatttataggctgcaaagttaacatccaaaagaaacaagtaaaac |
32258923 |
T |
|
| Q |
187 |
aaaattcaatgtatataagctcaagtgtttgtgtagtaccaaaataattcatcnnnnnnntataatattattaacttcttcatatttcatatatctatat |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32258922 |
aaaattcaatgtatataagctcaagtgtttgtgtagtaccaaaataattcatcaaaaaaatataatattattaacttcttcatatttcatatatctatat |
32258823 |
T |
|
| Q |
287 |
ttaggacaaatacttacagagccagggacgtaatagtgatatccagacataagaaattcatctttcctcatgaggaattgcatgactggatcacaagaaa |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32258822 |
ttaggacaaatacttacagagccagggacgtaatagtgatatccagacataagaaattcatctttcctcatgaggaattgcatgactggatcacaagaaa |
32258723 |
T |
|
| Q |
387 |
ggnacaaattctcccccaaaacagcatttgatccttgaggaacctgaagctttatcttacttgtacttatgnanaaatccatcttcttgnaggntgccgt |
486 |
Q |
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|| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||| ||| |||| | |
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| T |
32258722 |
ggtacaaattcttcaccaaaacagcatttgatccttgaggaacctgaagctttatcttacttgtacttatgtataaat-catcttcttgtaggttgccat |
32258624 |
T |
|
| Q |
487 |
taacatagnccctgaatanaacttggttnggtctgaacgtcatcaacancggtgttctttcccatg |
552 |
Q |
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|||||||| || |||||| ||||| ||| | ||||||||||||||||| ||||||||||||||||| |
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| T |
32258623 |
taacatagtccttgaatataactt-gtttgttctgaacgtcatcaacaacggtgttctttcccatg |
32258559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 40568212 - 40568131
Alignment:
| Q |
1 |
atgataccattcattgagtgcgagacacacttcatatctttttgggtaaggtccaagtaccatatgctttttgtgcttgata |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40568212 |
atgataccattcattgagtgcgagacacacttcatatctttttgggtaaggtccaagtaccatatgctttttgtgcttgata |
40568131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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