View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_14_74 (Length: 474)
Name: J5_14_74
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_14_74 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 37 - 474
Target Start/End: Original strand, 40567776 - 40568212
Alignment:
| Q |
37 |
cattaatagcataatgtaaaacataanatatcgaaccccgcaaaccttcctcttcccatcagacttgcaagttgctcctaaaacaatgaattttaatgtt |
136 |
Q |
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| T |
40567776 |
cattaatagcataatgtaaaacataaaatatcgaaccccgcaaaccttcctcttcccatcagacttgcaagttgctcctaaaacaatgaattttaatgtt |
40567875 |
T |
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| Q |
137 |
ttggtcataacataacataaatataagagaacaaattattgctcctctaatgctagcttatgtatgcagatattatatcatactaaacaacctattgaag |
236 |
Q |
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| T |
40567876 |
ttggtcataacataacataaatataagagaacaaattattgctcctctaatgctagcttatgtatgcagatattatatcatactaaacaacctattgaag |
40567975 |
T |
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| Q |
237 |
taaagaccatttcagtgtttacggtctattatttcaacgctaataccttctagagcttatggtctatatattacctcaaaagtaaaaactaggtctaata |
336 |
Q |
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| T |
40567976 |
taaagaccatttcagtgtttacggtctattatttcaacgctaataccttctagagcttatggtctatatattacctcaaaagtaaaaactaggtctaata |
40568075 |
T |
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| Q |
337 |
cattctagagcttacaatctcttgatcaacgtataataattatagtgtcgacttatatcaagcacnaaaagcatatggtaccttagaccttacccaaaaa |
436 |
Q |
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| T |
40568076 |
cattctagagcttacaatctcttgatcaacgtataataattatagtgtcgacttatatcaagcacaaaaagcatatggta-cttggaccttacccaaaaa |
40568174 |
T |
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| Q |
437 |
gatatgaagtgtgtctcgcactcaatgaatggnatcat |
474 |
Q |
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| T |
40568175 |
gatatgaagtgtgtctcgcactcaatgaatggtatcat |
40568212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 40568208 - 40568250
Alignment:
| Q |
1 |
atcatataatcctgtcttgaatacttcatcaggtctcattaat |
43 |
Q |
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| T |
40568208 |
atcatataatcctgtcttgaatacttcatcaggtctcattaat |
40568250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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