View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_14_76 (Length: 206)
Name: J5_14_76
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_14_76 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 49769852 - 49770050
Alignment:
| Q |
1 |
cttaattntcaggctgaagcactagaaggccaggaaaccaacatagttacagattatataattaaggcagaaaatccagttcaccnaatttttaaagatg |
100 |
Q |
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| T |
49769852 |
cttaattttcaggctgaagcactagaaggccaagaaaccaacatagttacagattatataattaaggtagaaaatccagttcatcaaatttttaaagatg |
49769951 |
T |
|
| Q |
101 |
actttaggataaaataaggaagaatctcntttttctcctgttttaaaacattcggcanattttaggactanangnatgngcngataccntggtaggaga |
199 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |||||||||||| | | || || |||||| |||||||||| |
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| T |
49769952 |
actttaggataaaataaggaagaatctcatttttttcctgttttaaaacatttggcagattttaggactagatgtttgtgctgataccatggtaggaga |
49770050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 3828828 - 3828667
Alignment:
| Q |
9 |
tcaggctgaagcactagaaggccaggaaacc-aacatagttacagattatataattaaggcagaaaatccagttcaccnaatttttaaagatgactttag |
107 |
Q |
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|||||||||||||||||||||||| ||| | ||||||||||||| ||||||||||||| |||||| | |||||| | |||||| | |||| ||||| |
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| T |
3828828 |
tcaggctgaagcactagaaggccaaaaaaactaacatagttacaggttatataattaagctagaaaagcaagttcagaaattttttagaaatgattttag |
3828729 |
T |
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| Q |
108 |
gataaaataaggaagaatctcntttttctcctgttt-taaaacattcggcanattttaggact |
169 |
Q |
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||||||||||||||||||||| ||||| | |||||| ||||||||| |||| ||||||||||| |
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| T |
3828728 |
gataaaataaggaagaatctcattttt-tactgtttctaaaacatttggcagattttaggact |
3828667 |
T |
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