View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: J5_14_77 (Length: 166)
Name: J5_14_77
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_14_77 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 158; Significance: 2e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 2e-84
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 39189879 - 39190036
Alignment:
| Q |
1 |
gttattatcatataataggaatccactaggatatattcatccacccacaacaaagttgaaaataaaacctgctccaagcatggcggtcttctcctctaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39189879 |
gttattatcatataataggaatccactaggatatattcatccacccacaacaaagttgaaaataaaacctgctccaagcatggcggtcttctcctctaga |
39189978 |
T |
|
| Q |
101 |
gggcctaacacaatcacaccagagatcctcaaggtttgcctattctttcattattaat |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39189979 |
gggcctaacacaatcacaccagagatcctcaaggtttgcctattctttcattattaat |
39190036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 5e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 5e-70
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 56232089 - 56232246
Alignment:
| Q |
1 |
gttattatcatataataggaatccactaggatatattcatccacccacaacaaagttgaaaataaaacctgctccaagcatggcggtcttctcctctaga |
100 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
56232089 |
gttattatcacataacaggaatccactaggatatattcatccacccacaacaaagttgaacataaaacctgctccaagcatggcggctttctcctctaga |
56232188 |
T |
|
| Q |
101 |
gggcctaacacaatcacaccagagatcctcaaggtttgcctattctttcattattaat |
158 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56232189 |
gggcctaacccaatcacaccagagatcctcaaggtttgcctattctttcattattaat |
56232246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 11096806 - 11096751
Alignment:
| Q |
19 |
gaatccactaggatatattcatccacccacaacaaagttgaaaataaaacctgctc |
74 |
Q |
| |
|
||||||||||||||| |||||||||| | |||||||||||| ||||| ||||||| |
|
|
| T |
11096806 |
gaatccactaggatacattcatccactctcaacaaagttgagcataaagcctgctc |
11096751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 12500 times since January 2019
Visitors: 8218