View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: J5_14_83 (Length: 632)
Name: J5_14_83
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_14_83 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 163 - 623
Target Start/End: Complemental strand, 53696466 - 53696009
Alignment:
| Q |
163 |
attaatttcgcccatatgcaatctttgacgaaattaaacaatcgaatgtgtattgtattgcttgctactatacatagttatctacttgacgtcaaatcaa |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53696466 |
attaatttcgcccatatgcaatctttgacgaaattaaacaatcgaatgtgtattgtattgcttgctactatacatagttatctacttgacgtcaaatcaa |
53696367 |
T |
|
| Q |
263 |
acattcctaaatagtaaatacaatgatgacggcactgtatgcaagaataatttgatgaattatttattttcctgccataaaatgggttgaaagttttcca |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
53696366 |
acattcctaaatagtaaatacaatgatgacggcactgtatgcaagaataatttgatgaattatttattttcctgccataaaatgggttgaaagtttccca |
53696267 |
T |
|
| Q |
363 |
aaaataactcagtccgttcgaaacatcacattatatatgttgaaatcgaagtttaatggccagaatcttctacttatttatttnaaagtgaatttctaat |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
53696266 |
aaaataactcagtccgttcgaaacatcacattatatatgttgaaatcgaagtttaatggccagaatcttctacttatttattttaaagtgaatttctaat |
53696167 |
T |
|
| Q |
463 |
cattaaantatctgacnnnnnnnntgaaatggccagaaaatctccaactcntggactcgggtanggtgtatatgcatttacatggctagaagaaaagntc |
562 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||| ||||||| || |
|
|
| T |
53696166 |
cattaaattatctgactaaaaaaatgaaatggccagaaaatct-caactcttggactcgggtaaggtgtatatgcatttacatggctag-agaaaagttc |
53696069 |
T |
|
| Q |
563 |
acatgccnattaggaggggcncatttgccgagnccntantaatagttgggaaaaatatttg |
623 |
Q |
| |
|
||||||| |||||||||| | ||||||| ||| | || |||||||| ||||||||||||| |
|
|
| T |
53696068 |
acatgcctattaggagggtcacatttgcagagtcagtaataatagtt-ggaaaaatatttg |
53696009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 53695975 - 53695808
Alignment:
| Q |
1 |
ttatgaataaattaagactttagtatgtggttggatgagcgtttagaaaagcaaaaccgcgataaaaaacgacttttacacnccnacttttgattttcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
53695975 |
ttatgaataaattaagactttagtatgtggttggatgagcgtttagaaaagcaaaaccgcgataaaaaacgacttttacataccaacttttgattttcac |
53695876 |
T |
|
| Q |
101 |
cgtggggaggctctcaaacctgagtttgcgcaagaaaatgtcaacccaaacaaatgctaagtattaat |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53695875 |
cgtggggaggctctcaaacctgagtttgcgcaagaaaatgtcaacccaaacaaatgctaagtattaat |
53695808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 9785 times since January 2019
Visitors: 7932