View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: J5_14_85 (Length: 749)
Name: J5_14_85
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_14_85 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 40049322 - 40048975
Alignment:
| Q |
1 |
ttcggtccattgtacctacatccgataatagtgtttggtttcattttgatcaaacgttacttggagttacaagttataacatgagtttaaatactacgac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40049322 |
ttcggtccattgtacctacatccgataatagtgtttggtttcattttgatcaaacgttacttggagttacaagttataacatgagtttaaatactacgac |
40049223 |
T |
|
| Q |
101 |
tcaattctgctccgcccaccggacttttggtttcactcactgccctttcaactccacttacttgtgttccacttattgctaaataccaaacacaaatata |
200 |
Q |
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| T |
40049222 |
tcaattctgctccgctcaccggacttttggtttcactcactgccctttcaactccacttacttgtgttccacttattgctaaataccaaacacaaatata |
40049123 |
T |
|
| Q |
201 |
tgcaaaacaagtgacgaataatatcacaagccaatttttgtccnnnnnnngtttatcttacaggtcagttatacattttctataacctctatactgttga |
300 |
Q |
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| T |
40049122 |
tgcaaaacaagtgacgaataatatcacaagccaatttttgtccaaaaaaagtttatcttacaggtcagttatacattttctataacctctatactgttga |
40049023 |
T |
|
| Q |
301 |
ttccaactacatttattgcaatatgatttgagaaacaataatattaat |
348 |
Q |
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| T |
40049022 |
ttccaactacatttattgcaatatgatttgagaaacaataatattaat |
40048975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 341 - 638
Target Start/End: Complemental strand, 40049865 - 40049568
Alignment:
| Q |
341 |
atattaattctaaaatgaaaagtattgcttgtcttgttaaggacttatgacagggatcactttgctccttaagtgtttttgagtatcattgtcaggtctt |
440 |
Q |
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| T |
40049865 |
atattaattctaaaatgaaaagtattgcttgtcttgttaaggacttatgacagggatcactttgctccttaagtgtttttgagtatcattgtcaggtctt |
40049766 |
T |
|
| Q |
441 |
gttgaagacttatcaaatggtccccattttcttgctctagaagttgtatttttctttgaactcaaacaaagcaaagatacctcattttcacctcacattg |
540 |
Q |
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| T |
40049765 |
gttgaagacttatcaaatggtccccattttcttgctctagaagttgtatttttctttgaactcaaacaaagcaaagatacctcattttcacctcacattg |
40049666 |
T |
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| Q |
541 |
tttataaatctttacattggggttgggaagcccaaaaccaatt-ccnatgcactttcaccgtgattgggctgaagctggaaaacatagcttctatccaa |
638 |
Q |
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| T |
40049665 |
tttataaatctttacatt-gtgtttggaagcccaaaaccaattcccaatgcactttcaccgtgatttggctgaagctggaaaacatagcttctatccaa |
40049568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 566 - 638
Target Start/End: Original strand, 40821945 - 40822017
Alignment:
| Q |
566 |
ggaagcccaaaaccaattccnatgcactttcaccgtgattgggctgaagctggaaaacatagcttctatccaa |
638 |
Q |
| |
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||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| | ||||| |||| |
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| T |
40821945 |
ggaagcccaaaaccaattctcatgcaatttcaccgtgatttggctgaagctggaaaacatggtttctacccaa |
40822017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 566 - 633
Target Start/End: Complemental strand, 6849778 - 6849710
Alignment:
| Q |
566 |
ggaagcccaaaaccaattccnat-gcactttcaccgtgattgggctgaagctggaaaacatagcttcta |
633 |
Q |
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| T |
6849778 |
ggaagcccaaaaccaatttccattgcactttgaccgtgatttggctgaagctggaaaacattgcttcta |
6849710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 625
Target Start/End: Complemental strand, 2428620 - 2428560
Alignment:
| Q |
566 |
ggaagcccaaaaccaattc-cnatgcactttcaccgtgattgggctgaagctggaaaacat |
625 |
Q |
| |
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||||| |||||||||||| | |||||||||||||||||| ||| ||||||||||||||| |
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| T |
2428620 |
ggaagtccaaaaccaatttacaatgcactttcaccgtgatgtggcagaagctggaaaacat |
2428560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 566 - 638
Target Start/End: Original strand, 34328758 - 34328831
Alignment:
| Q |
566 |
ggaagcccaaaaccaattccna-tgcactttcaccgtgattgggctgaagctggaaaacatagcttctatccaa |
638 |
Q |
| |
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|||||||||||||||||||| | |||||||||||| |||| ||||||||||| |||| ||| |||||| |||| |
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| T |
34328758 |
ggaagcccaaaaccaattcccaatgcactttcaccaagattcggctgaagctgcaaaatataacttctaaccaa |
34328831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 593 - 633
Target Start/End: Complemental strand, 29420037 - 29419997
Alignment:
| Q |
593 |
tttcaccgtgattgggctgaagctggaaaacatagcttcta |
633 |
Q |
| |
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||||||||||||| | ||||||||||||||||||||||||| |
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| T |
29420037 |
tttcaccgtgatttgactgaagctggaaaacatagcttcta |
29419997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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