View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: J5_14_87 (Length: 629)
Name: J5_14_87
Description: Pascalseqs
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] J5_14_87 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Original strand, 22360874 - 22361433
Alignment:
| Q |
1 |
ggatgaataatattgagaattgtaatctgtcgattaactcagatgaacgtgtttggttcatccagatgaaactctaaaattactacaacataaaaaccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22360874 |
ggatgaataatattgagaattgtaatctgtcgattaactcagatgaacgtgtttggttcatccagatgaaactctaaaattactacaacataaaaaccac |
22360973 |
T |
|
| Q |
101 |
attctttatatttagtcaatataattcaaatgaagtgattgagttagacacttcctcaattgaatctttttatgatattagagaaagtttgattcgaccc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22360974 |
attctttatatttagtcaatataattcaaatgaagtgattgagttagacacttcctcaattgaatctttttatgatattagagaaagtttgattcgaccc |
22361073 |
T |
|
| Q |
201 |
ataacttaattggatcttttactggacaagctagccaccccgccatgttgaaggggactggactaccgacgagatatggaaaagagacagcataaggacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22361074 |
ataacttaattggatcttttactggacaagctagccaccccgccatgttgaaggggactggactaccgacgagatatggaaaagagacagcataaggacc |
22361173 |
T |
|
| Q |
301 |
ccttttaacatccgcagaggttagaagttcaataaacacagttgtgttggtcccttcttgaaaaaatcttatgtcccttgttgagtttggcaggcatcaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22361174 |
ccttttaacatccgcagaggttagaagttcaataaacacagttgtgttggtcccttcttgaaaaaatcttatgt-ccttgttgagtttggcaggcatcaa |
22361272 |
T |
|
| Q |
401 |
gtgtgacacgaacgattctaacagtaccacttaatggatggagtaattnaattgaanttagacctttttggaaacattggtttttcntaaatttggatcc |
500 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22361273 |
gtgtgacacaaacgattctaacagtaccacttaatggatggagtaattaaattgaagttagacatttttggaaacattggtttttcgtaaatttggatcc |
22361372 |
T |
|
| Q |
501 |
caattttactaacaattaanatgttnaaganccctccc-aaacnacgacntcngtattaat |
560 |
Q |
| |
|
||||||||||||||||||| ||||| |||| |||||| |||| ||||| || |||||||| |
|
|
| T |
22361373 |
caattttactaacaattaaaatgtttaagacacctcccaaaacaacgacatcagtattaat |
22361433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 366
Target Start/End: Complemental strand, 32148887 - 32148850
Alignment:
| Q |
329 |
tcaataaacacagttgtgttggtcccttcttgaaaaaa |
366 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||| |
|
|
| T |
32148887 |
tcaataaacatagctgtgttggtcccttcttgaaaaaa |
32148850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 167 - 195
Target Start/End: Original strand, 32522553 - 32522581
Alignment:
| Q |
167 |
tttttatgatattagagaaagtttgattc |
195 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
32522553 |
tttttatgatattagagaaagtttgattc |
32522581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 10115 times since January 2019
Visitors: 7975